Gene Information

Name : M639_01330 (M639_01330)
Accession : YP_008294913.1
Strain : Listeria monocytogenes J2-031
Genome accession: NC_021837
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 269188 - 271650 bp
Length : 2463 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGATGTTTGGACGATTTACGCAAAGAGCTCAGAAAGTACTCGCGTTGTCACAAGAAGAGGCGATGCGTTTGAATCATAG
TAATTTAGGAACAGAACATATTTTATTAGGGCTTGTAAGAGAAGGCGAAGGAATTGCGGCGAAAGCTCTCTATGAACTGG
GAATTAGTTCTGAAAAAGTGCAGCAAGAGGTAGAGGGATTAATTGGGCATGGGGAAAAAGCTGTGACGACGATCCAATAT
ACACCTCGTGCGAAAAAAGTAATTGAACTTTCCATGGATGAGGCTCGTAAATTAGGCCATACTTACGTTGGGACAGAACA
TATCTTACTTGGGCTTATTCGTGAAGGCGAAGGAGTTGCGGCACGCGTTTTAAGTAATCTTGGTATTAGTTTGAATAAAG
CTCGGCAGCAAGTTCTACAGCTCTTAGGCGGCGGTGATGCTACTGGGGCGGGGAGACAAACAAATACGCAAGCTACACCG
ACTTTAGATAGTTTGGCACGTGACTTAACGGTTATTGCTCGGGAAGATAATTTGGATCCGGTTATTGGTCGTTCTAAAGA
AATCCAACGTGTGATTGAAGTACTTAGTCGCCGGACGAAAAATAACCCGGTACTCATTGGGGAACCTGGTGTCGGTAAAA
CAGCGATTGCTGAAGGCTTAGCGCAACAAATTGTTCGTAATGAAGTACCTGAGACCTTACGTGGAAAACGTGTAATGACA
TTGGATATGGGAACTGTTGTGGCAGGTACAAAATATCGTGGTGAATTCGAAGACCGTTTGAAGAAAGTAATGGATGAAAT
TCGTCAAGCTGGGAATGTTATTCTATTTATCGATGAATTGCATACGTTAATCGGTGCAGGTGGGGCGGAAGGTGCGATTG
ATGCATCGAATATCTTGAAGCCGCCTCTAGCTCGTGGAGAGTTGCAATGTATTGGGGCAACAACGCTCGACGAGTACCGT
AAATATATTGAAAAAGATGCTGCGCTTGAGAGACGTTTCCAACCGATTAAAGTAGACGAACCAACTGTAGAAGAATCTAT
TCAAATTTTACATGGATTGCGTGATCGTTATGAAGCGCATCACCGAGTTGCAATTACGGATGAAGCACTTGAGGCCGCTG
TTCGTTTATCTGATCGCTATATTTCAGACCGTTTCTTACCTGATAAAGCGATTGATGTTATCGATGAATCTGGTTCTAAA
GTACGTTTGAAATCTTTTACAACGCCAAAAAATGTAAAAGAAATGGAAAATAATTTATCCGATTTGAAAAAAGAAAAAGA
TGCGGCTGTTCAAGGTCAAGAATTTGAAAAAGCAGCGTCATTACGTGATAAAGAACAAAAACTCAAAAAATCATTAGAAG
AAACTAAAGCGAATTGGCAAGAAAAACAAGGGCTTGACCATAGTGAAGTAACAGAAGATATTGTCGCTGAAGTGGTTGCT
AGTTGGACTGGGATTCCAGTTGCGAAACTTGCGGAAACAGAGACAAATAAACTGTTAAATATGGAAAAACTTTTACATGA
ACGTGTGATTGGACAAGATGCAGCGGTTAAAGCTGTATCGCTAGCTGTACGTCGAGCTCGTGCAGGCCTTAAAGATCCGA
AACGTCCGATTGGTTCCTTTATTTTCCTTGGACCTACTGGTGTTGGGAAAACAGAACTTGCGCGTGCACTTGCTGAGTCG
ATGTTTGGCGATGAGGATTCGATGATTCGGATTGATATGTCTGAGTACATGGAGAAATTTTCAACTGCTCGTTTAGTTGG
GGCTCCTCCAGGTTATGTAGGATACGAAGAAGGTGGACAGCTGACAGAAAAAGTTCGGCAAAAACCTTATTCAGTAGTCC
TTTTAGATGAAATTGAAAAAGCACATCCGGATGTATTTAATATGTTGCTACAAGTACTGGATGATGGACGTTTGACTGAT
TCTAAAGGGCGAGTAGTTGATTTTAGAAATACAGTTATCATTATGACTTCCAATATTGGAGCTCAAGAAATGAAACAAGA
TAAATCAATGGGCTTTAATGTTACTGATCCACTTAAAGACCATAAAGCGATGGAGCACCGCGTTTTACAAGATTTAAAAC
AGGCGTTCCGACCAGAATTTATCAACCGAATTGATGAAACAATTGTATTCCATTCGCTGCAAGAAAAAGAATTGAAACAA
ATTGTTACTTTACTAACTGCTCAATTAACAAAACGCTTAGCCGAACGCGATATTCACGTGAAATTAACTGAAGGTGCGAA
ATCCAAAATCGCTAAAGATGGCTACGATCCAGAGTACGGAGCTCGTCCTTTAAAACGGGCTATTCAAAAAGAAGTGGAAG
ACATGCTTTCTGAAGAATTGCTTCGTGGTAACATTAAAGTAGGCGATTACGTTGAAATTGGTGTGAAAGATGGCAAGTTA
GAGGTTAGAAAAAAAGATGCTCCTAAAAAGAAAACAACCTCTAAAAAAGTAAAAGCTAAATAA

Protein sequence :
MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY
TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP
TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT
LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR
KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK
VRLKSFTTPKNVKEMENNLSDLKKEKDAAVQGQEFEKAASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA
SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES
MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD
SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ
IVTLLTAQLTKRLAERDIHVKLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDGKL
EVRKKDAPKKKTTSKKVKAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 58
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 9e-97 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M639_01330 YP_008294913.1 ATP-dependent Clp protease ATP-binding protein VFG0079 Protein 0.0 100
M639_01330 YP_008294913.1 ATP-dependent Clp protease ATP-binding protein VFG0080 Protein 1e-155 53