|
Name : clpB (SDIMI_v3c02950) Accession : YP_008292394.1 Strain : Spiroplasma diminutum CUAS-1 Genome accession: NC_021833 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATPase subunit ClpB Function : - COG functional category : - COG ID : - EC number : - Position : 319941 - 322088 bp Length : 2148 bp Strand : + Note : - DNA sequence : ATGGATTTTACACAAAAACCAGATCCTTTAAATGATCCAGAAATCCTAAATAAATATACAAGGGATTTAACTAAGGATGC AAAAGAAGGAAAAATAGACCCCATCATTGGTAGAGATGATGAAATTATGCGAGTAATTAGAATTTTAAGTAGAAAAACTA AAAATAATCCAGTTCTTATTGGAGAACCTGGAGTAGGGAAAACAGCAATTGCTGAAGGTTTAGCACAAAGAATAAATAAA GGTGATGTACCTAGTGTTCTAAAAGATAAAAAAATCCTTGAATTAGATATGGGTAGTGTAATGGCAGGAGCTAGTTTCTT AGGTGATTATGAAGCTAGAATTAAGGGTATTGTAAATGCTATACAAAAAGAAAATGGGCAAATTATATTATTTATTGATG AATTACATTTAATAGTAGGAGCAGGAAAAACAGGTAATGGTGGAGGAATGGACGTTTCTAATCTATTAAAACCTGCACTT GCTAGAGGTGGAATTAAAGTAATTGGAGCTACAACTCTTAAAGAATATAGAGAATATATTGAAAAAGATGCTGCATTAGA AAGAAGATTTCAAAAAGTAGTAGTAAGTGAACCTACAATTGAAGAAACAATATCAATTTTAAGAGGTTTAAAGGAACGTT TTGAATCTTATCATGGAGTTAGAATTCATGATAATGCTTTAGTTGCAGCTGCACAATTAAGTGATAGATATATATCTGAT AGATTTTTACCAGATAAAGCAATTGACTTAGTTGATGAAGCAAGTGCAACAATTAAAACTGAATTAGCTTCTGTTCCAAC AGAACTTTATCAAATTGATAGAAAAGTAATGCAACTCGAAATAGAAAAAGCTGCTTTATCAAAAGAACAAGATGAAAAAT CAAAAGACAGATTACAACAAGCTGAAAAAGAATTAAATAATTTGAAAGCAAAACAAACAGAATTTAATACAAAATGAGAT TCAGAAAAAAGAGCTTTAGAAAAAATTAATCAATTCAGATCAACTATTGATAATTTAAAGATTGAATTAGAACAATCTCA AACCCAAGCAAATTATCAAAGAGCTGGGGAAATACAATATTCATTATTACCAGCATTAGAAAAGCAATTATCAACAGCAC TTGATAACAATAAAGAAAAGTTAATTTCTGAAGAAGTTACAGAAAATGAAATAGCTTCAATTGTTTCAAGATGAACTGGA ATTGAAATGGAAAACTTAATTGAAAGTGAAAAGCAAAAATTACTTATGTTAGGTACATCTTTAAAAAAAATGGTAAAAGG TCAAAATCAAGCAATTGAACTTGTTTCAAATGCCATTATTAGGAGTAGAAGTGGTATTAAAGATCCAAATAAACCTATAG GTAGTTTCTTATTTTTAGGGCCAACAGGTGTAGGTAAAACAGAAGTTGCTAAATCACTTGCAAAAAATTTATTTGGAAGT GAAAAGAAAATGTTACGTTTTGATATGTCAGAATACATGGAAAAACATTCGGTTTCTAAATTATTAGGTTCTCCTCCAGG TTATGTTGGTTATGAAGAAGGTGGAAAATTAACTGAAGCAGTTAGAAGAGCACCATATTCAATTTTATTATTTGATGAAG TTGAAAAAGCTCATCCGGATGTATTCAATATTTTCTTACAAATATTAGATGATGGTAGAGTAACAGATTCACTTGGAAAA ACAATTGACTTTAAAAATACAATTATAATAATGACTTCAAATATAGGTTCTGAATATTTAATTTCAACACCACCTGAATT AGTTGATGAAGATGTATTAAATGAAAACTTAAAAAAATTCTTTAGACCAGAATTTTTAAATAGAATTGATAATATTATTA ATTTTAATGCATTATCAAAAGAAGTTATTAAAGAAGTAATTGTCAAAACATTAGATGAATTAAAACAAAGAATTCTTTTG GCAAATGAATATATTATTAATTTTACAGATTCTTCAATTAAGAAAATTCTTGAAGAAGGTTATGATCAACAATATGGTGC AAGACCAATTAAAAGATATATTGAAAGAAATATTGAAACTTTAATTGCAAAAGCAATAGTTTCTGGAGAAATTGAATCAA AAAGAAACTATGTAGTTGATGTAAATGACAATAAATTTGTTATATCAACTTCAAATAAATTAAATTAG Protein sequence : MDFTQKPDPLNDPEILNKYTRDLTKDAKEGKIDPIIGRDDEIMRVIRILSRKTKNNPVLIGEPGVGKTAIAEGLAQRINK GDVPSVLKDKKILELDMGSVMAGASFLGDYEARIKGIVNAIQKENGQIILFIDELHLIVGAGKTGNGGGMDVSNLLKPAL ARGGIKVIGATTLKEYREYIEKDAALERRFQKVVVSEPTIEETISILRGLKERFESYHGVRIHDNALVAAAQLSDRYISD RFLPDKAIDLVDEASATIKTELASVPTELYQIDRKVMQLEIEKAALSKEQDEKSKDRLQQAEKELNNLKAKQTEFNTKWD SEKRALEKINQFRSTIDNLKIELEQSQTQANYQRAGEIQYSLLPALEKQLSTALDNNKEKLISEEVTENEIASIVSRWTG IEMENLIESEKQKLLMLGTSLKKMVKGQNQAIELVSNAIIRSRSGIKDPNKPIGSFLFLGPTGVGKTEVAKSLAKNLFGS EKKMLRFDMSEYMEKHSVSKLLGSPPGYVGYEEGGKLTEAVRRAPYSILLFDEVEKAHPDVFNIFLQILDDGRVTDSLGK TIDFKNTIIIMTSNIGSEYLISTPPELVDEDVLNENLKKFFRPEFLNRIDNIINFNALSKEVIKEVIVKTLDELKQRILL ANEYIINFTDSSIKKILEEGYDQQYGARPIKRYIERNIETLIAKAIVSGEIESKRNYVVDVNDNKFVISTSNKLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 5e-105 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-105 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_008292394.1 | ATP-dependent Clp protease, ATPase subunit ClpB | VFG2076 | Protein | 5e-118 | 41 |
