Gene Information

Name : SE451236_20420 (SE451236_20420)
Accession : YP_008267071.1
Strain : Salmonella enterica 08-1736
Genome accession: NC_021820
Putative virulence/resistance : Virulence
Product : membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4264742 - 4265590 bp
Length : 849 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGTTCTTAACAACGTTACTGGAACCCTTTCAGTTTGATTTTATGGTGAACGCCCTTATGGTTTCGGTCATTGTGGCGAT
TCCCTGCGCCTTACTGTCCGTGTTTTTAGTGTTAAAAGGCTGGGCGTTAATGGGCGATGCAATGAGTCATGCGGTATTCC
CCGGGGTCGTGCTGGCATATATTGTGGGGATCCCCCTGGCGATTGGCGCTTTCATTGCCGGATTATTTTGCGCTATCGCC
ACCGGCTATCTGGACGATAACAGCCGCATCAAACGTGATACGGTGATGGGCATCGTCTTTTCCGGGATGTTTGGCGCAGG
TCTGGTGCTCTATGTTTCTATTCAATCGGAAGTGCATCTGGATCACATCCTGTTTGGGGATATGCTGGGCGTATCGCTGG
GGGATATCGTACAAACGTCAGTTATTGCACTGGGTATTGCGTTAATCATAGGGCTGAAATGGAAAGATCTCCTGCTACAC
GCTTTTGACCCGCACCAGGCGAAAGCCAGCGGGCTGAATACCACACTACTGCATTATGGCCTGCTATGTATGATTGCGCT
GACTATCGTCGCCACGCTGAAATCGGTGGGCATTATTCTGTCAATCTCACTGCTTATCGCCCCCGGCGCAATTGCCATTT
TGCTGACGCGACGCTTTGCGCGCGCGCTGGGATTAGCGGTGAGTCTGTCAGTTATTACCGCTTTTGCGGGCGTTTATCTG
TCTTTTTATCTTGATAGCGCGCCAGCGCCGACCATCGTGGTATTATTTGCCATCGTGTTTATTGCGGCATTTATTTACGC
AACATGGCGCGACAGGCGTAATGAAATCGTACCAGAGGCGCAAGGTTAA

Protein sequence :
MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIA
TGYLDDNSRIKRDTVMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH
AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALGLAVSLSVITAFAGVYL
SFYLDSAPAPTIVVLFAIVFIAAFIYATWRDRRNEIVPEAQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-104 100
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-104 100
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-104 99
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-104 99
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-104 99
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-34 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-33 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-33 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-34 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SE451236_20420 YP_008267071.1 membrane protein BAC0352 Protein 7e-105 100
SE451236_20420 YP_008267071.1 membrane protein BAC0442 Protein 5e-55 54
SE451236_20420 YP_008267071.1 membrane protein BAC0441 Protein 7e-34 43
SE451236_20420 YP_008267071.1 membrane protein BAC0351 Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SE451236_20420 YP_008267071.1 membrane protein VFG0528 Protein 6e-105 100
SE451236_20420 YP_008267071.1 membrane protein VFG0527 Protein 4e-34 41