Gene Information

Name : CFSAN002050_05960 (CFSAN002050_05960)
Accession : YP_008259138.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 897833 - 898333 bp
Length : 501 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAATACTGTAATATCACTGATACCGGCATCCGCGCCCGATGCGCCACCCGCCTTAACGCCGTATGCACAGCGCACTAT
CAGAAGGGCCGTGAATCTGCTGGATAAACACCTGCGCCAGCCTGGCGTGATTTTTACTTCCGCAGCATCCGTTCGCGACT
GGCTGCGTCTGCAACTTTCGCCGCTGGAGCGGGAGGTATTTATGGTGCTGTTTCTGAATAATCAACACCAGTTACTGGCG
CATGAGACGCTGTTCACCGGTGGTGTCCGCCATACGGAAGTTCATCCACGGGAAGTCCTGCGCGCCGCCATGCGCCATAA
CGCTGCGGCAGTGGTGCTGGCTCATAATCACCCGTCCGGGGATGCCGAACCCAGTCAGGCCGATCGACTAATTACCACAC
GGCTGGTGAACACGCTGGACCTGGTCGATATCCGCGTTCTCGACCATTTCGTTGTCGGCCACCGGGATATCCTGTCCTTT
GCCGAACGGGGCTGGCTGTGA

Protein sequence : 
MNTVISLIPASAPDAPPALTPYAQRTIRRAVNLLDKHLRQPGVIFTSAASVRDWLRLQLSPLEREVFMVLFLNNQHQLLA
HETLFTGGVRHTEVHPREVLRAAMRHNAAAVVLAHNHPSGDAEPSQADRLITTRLVNTLDLVDIRVLDHFVVGHRDILSF
AERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 8e-33 64
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-34 62
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 1e-33 61
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 8e-34 61
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 7e-34 61
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-33 61
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 5e-34 61
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-33 61
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 8e-34 61
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 9e-34 61
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 9e-34 61
unnamed AAL08475.1 unknown Not tested SRL Protein 7e-34 61
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 7e-34 61
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-33 61
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-33 61
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-33 61
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 7e-34 61
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-33 61
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 4e-32 60
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-26 53
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-26 53
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-26 53
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 7e-22 52
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-22 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_05960 YP_008259138.1 hypothetical protein VFG1617 Protein 3e-34 61
CFSAN002050_05960 YP_008259138.1 hypothetical protein VFG1678 Protein 4e-34 61
CFSAN002050_05960 YP_008259138.1 hypothetical protein VFG1528 Protein 4e-34 61
CFSAN002050_05960 YP_008259138.1 hypothetical protein VFG1066 Protein 3e-34 61
CFSAN002050_05960 YP_008259138.1 hypothetical protein VFG0660 Protein 2e-33 61
CFSAN002050_05960 YP_008259138.1 hypothetical protein VFG1119 Protein 1e-26 53