Gene Information

Name : CFSAN002050_05850 (CFSAN002050_05850)
Accession : YP_008259116.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 872562 - 873830 bp
Length : 1269 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGGCTCTGACTGATACTAAAGTCCGTTCGGCAAAACCTGAAGATAATGCAAACCCGCTATCTGATGGTGATGGCCTGTT
TTTACTGGTACATGCTAATGGCTCCAAATATTGGCGATTTCGTTTTCGCTTTGGTGGCAAGCAGCATGTGATGGCGTTTG
GCGTTTATCCCGAAGTTTCACTGGCGGATGCCAGGAAGAAAAGGGAGGAGGCCAGGAAGCTGGTTGCTGCTGGTATCGAT
CCTCGAGCACATAAACGTGCTGTGAAAGAAGAACAGGCGAAAGAGATTATTACTTTCGAGAAGGTCGCCCGAGATTGGCT
CGCGACCAACCAGAAATGGTCGGAAGATCACGCTGAGCGAGTGAAAAAGAGTCTGGAGGATAATGTTTTTCCGGCGATTG
GGACGCGCAATATTGCTGAATTGAGCACCCGCGATTTGTTACTTCCCATTAAGGCCGTAGAGACGTCTGGACGTCTTGAA
GTGGCTTCCCGTCTCCAACAACGTACTACGGCCATCATGCGTTATGCAGTGCAAAGCGGGCTAATTGATTACAATCCGGC
TCAGGAGATGGCAGGAGCGGTTGCTTCTGGCAATCGAAAGCATCGTCCTGCGCTGGCCTTAAAGCGTATTCCAGAACTGC
TTCAGAAAATAGATGGCTATACCGGAAGACCATTAACCCGCTGGGCAACCGAACTTACCCTACTGATTTTTATTCGATCC
AGTGAACTACGTTTTGCTCGTTGGTCGGAGATTGATTTTGAAACGTCAATGTGGACGATTCCACCAGAGAGAGAACCTAT
CCCTGACGTTAAGCATTCTCACCGAGGATCAAAGATGCATACACCGCATTTGGTGCCGCTTTCTAAGCAAGCACTGGCGA
TCCTGAAACAGATAAAGCAGTTCTGTGGCAAGCATGAACTGATTTTTATTGGCGATCACGATCCGCGCAAGCCAATGAGT
GAAAACACGGTGAATAGTGCATTGCGGGTGATGGGCTATGACACCAAGGTTGAGGTTTGCGGCCACGGATTCCGCACGAT
GGCCTGTAGTTCATTGATTGAGTCAGGGTTGTGGTCGAAGGATGCGGTGGAACGACAGATGAGCCATATGGAACGTAACT
CAGTGAGGGCGGCGTATATCCATAAGGCGGAGTTTATCGACGAGCGCAAGCTGATGCTGCAATGGTGGGCTGATTTCCTG
GATGCGAATCGGGAGAAGGGGATTACGCCATTTGACTATGCGAAGATCAACCAGGGGCATGGTGAGTGA

Protein sequence : 
MALTDTKVRSAKPEDNANPLSDGDGLFLLVHANGSKYWRFRFRFGGKQHVMAFGVYPEVSLADARKKREEARKLVAAGID
PRAHKRAVKEEQAKEIITFEKVARDWLATNQKWSEDHAERVKKSLEDNVFPAIGTRNIAELSTRDLLLPIKAVETSGRLE
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASGNRKHRPALALKRIPELLQKIDGYTGRPLTRWATELTLLIFIRS
SELRFARWSEIDFETSMWTIPPEREPIPDVKHSHRGSKMHTPHLVPLSKQALAILKQIKQFCGKHELIFIGDHDPRKPMS
ENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEFIDERKLMLQWWADFL
DANREKGITPFDYAKINQGHGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 7e-158 82
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-140 67
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-143 67
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-143 67
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-143 67
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-143 67
int AAK00456.1 Int Not tested SHI-1 Protein 1e-135 67
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-142 67
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-142 67
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-142 67
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 8e-143 66
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-141 66
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-141 66
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-140 66
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-139 66
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-140 65
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 5e-141 65
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 6e-141 65
int AAL51028.1 CP4-like integrase Not tested LEE Protein 5e-141 65
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 6e-141 65
int-phe AAL60261.1 Int-phe Not tested LEE Protein 5e-141 65
int CAC81896.1 integrase Not tested LEE II Protein 5e-133 65
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-131 63
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-131 63
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 6e-80 57
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 5e-116 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 7e-93 56
int CAA08754.1 integrase Not tested HPI Protein 1e-107 55
int CAB59974.1 integrase Not tested HPI Protein 4e-108 55
int YP_002346908.1 integrase Not tested HPI Protein 5e-107 54
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 5e-107 54
int2 NP_993013.1 integrase Not tested HPI Protein 5e-107 54
int CAA21384.1 - Not tested HPI Protein 5e-107 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 8e-113 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 8e-113 53
unnamed AAD17660.1 unknown Not tested HPI Protein 6e-104 53
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 3e-102 52
int AAD44730.1 Int Not tested SHI-2 Protein 2e-82 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-83 43
int CAC39282.1 integrase Not tested LPA Protein 5e-83 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-81 42
int ACU09430.1 integrase Not tested LEE Protein 2e-81 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-81 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-81 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 7e-81 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-80 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-80 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 4e-74 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_05850 YP_008259116.1 integrase VFG1536 Protein 4e-158 82
CFSAN002050_05850 YP_008259116.1 integrase VFG0626 Protein 5e-144 67
CFSAN002050_05850 YP_008259116.1 integrase VFG1693 Protein 5e-141 66
CFSAN002050_05850 YP_008259116.1 integrase VFG0783 Protein 1e-81 42
CFSAN002050_05850 YP_008259116.1 integrase VFG0598 Protein 4e-81 42