|
Name : CFSAN002050_25160 (CFSAN002050_25160) Accession : YP_008262882.1 Strain : Salmonella enterica CFSAN002050 Genome accession: NC_021818 Putative virulence/resistance : Virulence Product : fimbrial outer membrane usher protein SthC Function : - COG functional category : - COG ID : - EC number : - Position : 4879737 - 4882265 bp Length : 2529 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGACATGGACGCATCTTCCTCTGGGCAATAAGACCTCGCGTTTCACGCAGTCTGCGCTTGCGCTGATGATAGCGGGTAC GCTCCCCGCGTATGCGGGAACATTTAACCCGCGCTTTCTGGAGGATGTGCCGGGTATTGATCAGCACGTTGACCTTTCAA TGTATGAATCCAATAAAGCTGAACACCTGCCAGGTAAATACCGCGTCTCGGTGGTGGTCAACGAAAAAAAAATGGAGTCT CGCACCCTGGAGTTTAAGGCAGCGACAGAGGCGCAGCGCGCAAAAATGGGTGAATCCCTGGTGCCGTGCTTAAGCCGCGT GCAGCTTGAAGATATGGGCGTGCGTATTGATAGCTTCCCGGCGCTGAAAATGGCCCCGCCTGAAGCCTGTGTTGCTTTTG ACGACATTATTCCCCAGGCCGCCAGCCATTTCGATTTTGCAGACCAGACCCTGATCATGAGCTTCCCGCAGGCTGCGATG AAGCAGACAGCGCGCGGTACGGTGCCAGAATCGCAGTGGGACGAAGGGGTGAATGCCCTGCTGGTGGATTATAACTTCTC CGGCAGCAACGCCAGCTATGACGCGCACGACAGTGATACCAACTACAACAGCGACAGCTACTATCTGAACCTGCGCAGCG GTATGAACCTGGGGGCATGGCGATTACGTAACTATAGTACCTGGACGCGAAACGACGGTAACAACACATGGGATAACATT GGCACATCCCTAAGCCGCGCCATTGTGCCGCTGAAATCACAGCTGACGTTGGGGGATACCTCCACCGCCGGTGATATTTT TGACAGCGTTCAGATGCGCGGGGTGCAGTTAACTTCCGACGAAGAGATGCTGCCTGACAGCCAGCGCGGGTTTGCGCCCG TCATCCGGGGTATTGCCAAAAGTAACGCCGAAGTCACCGTTGAGCAGAACAACTACGTTATTTACCGTACGTTTGTTCAG CCGGGTGCGTTTGAAATTAACGACCTGTATCCAACCTCAAACAGCGGCGACCTGACGGTCACCATTAAAGAATCGGACGG CAGTGAGCAGAAGTTCGTTCAGCCGTTCTCCTCGGTGGCGCTCCTCCAGCGTGAAGGCCATCTCAAGTACAGCCTTTCCG CCGGGGAATACCGTGCCGGGAACTATAACAGCGCCGAGCCGAAATTCGGGCAGCTTGATGCCATGTACGGCCTGCCATAT GGCTTTACCGTTTACGGTGGTGCGATCTTCTCTGACGACTATTACTCGCTGGCGGGAGGATTAGGTAAAAACTTCGGCTA TATCGGCGCGATCTCCATCGATGTAACCCAGGCAAAAAGCAAGCTGGCAAATGAGGAGAATTCGGAAGGTCAGTCTTATC GTTTCCTCTACTCCAAGAGCTTTAACAGCGGTACCGATTTCCGTCTGCTGGGTTACAAGTATTCGACCAGCGGCTATTAC ACCTTCCAGGAAGCGACGGATGTGCGCAGCGATGCGGACAGCTCTTATAGCCAGTATCACAAACGTAGTCAGATTCAGGG CAACGTAACGCAGCAACTGGGCGCCTGGGGCTCGGTCTATTTTAACGTCACGCAGCAGGACTACTGGAACGATGAAGGTA AACAGCGTTCGCTGAATGCCGGTTATAACGGCCGTATTGGCCGCGTGAACTACAGCGTTGCTTACACCTGGACGAAAAGC CCGGAGTGGGATGAGAGCGATCGTTTACTGTCATTCTCCATGTCGATTCCACTGGGACGCGTGTGGAGTAACTACCACCT CACGACCGATCAGCATGGTCGAACCAACCAGCAGTTAGGGGTGAGCGGCACCGCGCTGGAAGACCACAACCTGAACTATA GCGTGCAGGAAGGCTACGGCAGCAACGGCGTGGGTAACAGCGGCAGCGTGAACCTGGATTACCAGGGCGGCGTGGGTAGC GCCAGCCTGGGTTACAACTACAACCGTGACGGCCAGCAGGTGAACTACGGTTTGCGCGGCGGTGTGATAGCCCATAGCGA AGGCATCACTCTTTCTCAACCGCTGGGTGAATCCATGGCCATTATCTCCGCACCGGGGGCGCGCGGCGCGCACGTGATCA ACAACGGTGGTGTGGAAGTGGACTGGATGGGTAATGCGGTCGTGCCTTATCTCACTCCGTACCGTGAAACGGAAGTCTCA CTGCGAAGCGACAGCCTGAACAACCAGGTTGACCTGGATACCGCCTCCGTCAACGTAGTGCCGACGCGCGGCGCGATTGT TCGTGCCCGCTTCGATACCCGAGTGGGCTATCGCGTGCTGATGAACCTGACGCAGGCCAATGGCAAAGCGGTGCCGTTTG GTGCTACCGCCACGCTGCTGGATACCACAAAAGAGTCCAGCAGTATCGTGGGTGAAGACGGTCAGCTTTATATCAGCGGG ATGCCGGAGAAAGGTGCCCTTCAGGTGAACTGGGGGAAAGACCAGGCACAGCAATGCCGCGTGGCGTTTACGCTGCCGGA ACAACAGGATAATACCGGCGTGGTGATGGCGAATGCCGTCTGCCGGTAA Protein sequence : MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMES RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSDTNYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ PGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPY GFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKS PEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGS ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISG MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 4e-166 | 45 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 5e-168 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CFSAN002050_25160 | YP_008262882.1 | fimbrial outer membrane usher protein SthC | VFG0454 | Protein | 0.0 | 99 |
| CFSAN002050_25160 | YP_008262882.1 | fimbrial outer membrane usher protein SthC | VFG0876 | Protein | 1e-168 | 45 |
| CFSAN002050_25160 | YP_008262882.1 | fimbrial outer membrane usher protein SthC | VFG1645 | Protein | 3e-168 | 41 |
| CFSAN002050_25160 | YP_008262882.1 | fimbrial outer membrane usher protein SthC | VFG0446 | Protein | 1e-153 | 41 |
| CFSAN002050_25160 | YP_008262882.1 | fimbrial outer membrane usher protein SthC | VFG0912 | Protein | 2e-167 | 41 |
