Gene Information

Name : CFSAN002050_22860 (CFSAN002050_22860)
Accession : YP_008262437.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4401720 - 4402379 bp
Length : 660 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCGAATTTTACTGGTAGAAGATGACACACTTATTGGCGATGGCATAAAAGCAGGCCTGAGTAAAATGGGTTTCAGCGT
CGACTGGTTTACCGAGGGACGTCCGGGCAAAGAGGCGCTTTACAGCGCGCCTTATGATGCGGTTATTTTAGATTTGACGC
TGCCAGGCATGGACGGACGGGATATTTTGCGCGAATGGCGCGAAAAGGGTAAACAGGAACCGGTACTGATCCTGACGGCG
CGCGACGCGTTAGCAGAGCGCGTCGAGGGGCTACGTCTGGGCGCCGATGACTATTTATGTAAACCTTTCGCGCTCATTGA
GGTCGCCGCCCGTCTGGAGGCGTTGGTACGCCGCGCCAGCGGTCAGGCCAGTAGCGAATTGCGCCACGGCCAGGTGACGC
TCAATCCAGGCAATCTCGTCGCGACGCTTGCCGGCGAACCGCTGGCCTTAAAACCAAAAGAGTTCGCGTTGCTGGAACTC
TTACTGCGCAACAAAGGTCGCGTGCTGCCGCGCAAGCTTATTGAAGAGAAGCTGTATAACTGGGATGACGACGTGTCCAG
CAATGCAGTGGAAGTCCATGTTCATCATTTACGCCGCAAGCTCGGCAGCGAATTTATTCGCACCGTACACGGCATCGGCT
ACACCCTGGGTGACGCATGA

Protein sequence : 
MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGKQEPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL
LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-34 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_22860 YP_008262437.1 transcriptional regulator BAC0487 Protein 1e-34 46
CFSAN002050_22860 YP_008262437.1 transcriptional regulator BAC0308 Protein 2e-30 43
CFSAN002050_22860 YP_008262437.1 transcriptional regulator BAC0638 Protein 6e-26 42
CFSAN002050_22860 YP_008262437.1 transcriptional regulator NC_002516.2.879194.p Protein 2e-23 41
CFSAN002050_22860 YP_008262437.1 transcriptional regulator BAC0347 Protein 3e-28 41
CFSAN002050_22860 YP_008262437.1 transcriptional regulator BAC0083 Protein 2e-30 41
CFSAN002050_22860 YP_008262437.1 transcriptional regulator BAC0111 Protein 3e-28 41
CFSAN002050_22860 YP_008262437.1 transcriptional regulator BAC0197 Protein 5e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_22860 YP_008262437.1 transcriptional regulator VFG0473 Protein 7e-35 47
CFSAN002050_22860 YP_008262437.1 transcriptional regulator VFG1390 Protein 2e-26 41