Gene Information

Name : CFSAN002050_22100 (CFSAN002050_22100)
Accession : YP_008262287.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4246028 - 4246708 bp
Length : 681 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAAAATATTGATCGTCGAAGACGAAATTAAAACAGGTGAATATCTCAGCAAAGGGCTTACAGAGGCAGGGTTCGTAGT
GGATCACGCTGATAATGGTCTTACCGGATATCATCTCGCCATGACAGCCGAGTATGATTTAGTCATTCTGGATATCATGC
TACCTGATGTGAACGGCTGGGATATCATCCGCATGCTGCGCACTGCCGGAAAGGGTATGCCGGTCTTACTGCTGACAGCC
CTCGGCACGATCGAACATAGGGTCAAAGGACTGGAACTGGGTGCGGACGATTATCTGGTTAAACCCTTTGCGTTTGCCGA
ACTGCTCGCCCGGGTGAGAACCCTTCTGAGGCGGGGAAACACGATGATCACGGAAAGCCAGTTTAAGGTGGCTGACCTCT
CGATTGATCTCGTATCCAGAAAAGTCAGTCGCGCCGGAAACCGCATTGTGCTCACCAGTAAAGAGTTCAGCCTGCTGGAA
TTCTTCATTCGCCATCAGGGAGAGGTTCTTCCCCGCTCCCTGATTGCCTCTCAGGTCTGGGACATGAATTTTGACAGCGA
CACTAATGCGATCGATGTCGCAGTAAAGCGACTCCGCGCTAAAATAGACAACGATTACGAGACAAAGCTGATCCAGACAG
TCCGGGGCGTGGGCTACATGCTGGAGGTCCCGGATGCATAG

Protein sequence : 
MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWDIIRMLRTAGKGMPVLLLTA
LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNTMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLE
FFIRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEVPDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-55 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-55 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_22100 YP_008262287.1 transcriptional regulator BAC0347 Protein 1e-94 93
CFSAN002050_22100 YP_008262287.1 transcriptional regulator BAC0111 Protein 1e-95 88
CFSAN002050_22100 YP_008262287.1 transcriptional regulator BAC0083 Protein 5e-71 62
CFSAN002050_22100 YP_008262287.1 transcriptional regulator BAC0638 Protein 4e-65 62
CFSAN002050_22100 YP_008262287.1 transcriptional regulator BAC0197 Protein 1e-65 60
CFSAN002050_22100 YP_008262287.1 transcriptional regulator BAC0308 Protein 3e-62 58
CFSAN002050_22100 YP_008262287.1 transcriptional regulator BAC0125 Protein 8e-64 56
CFSAN002050_22100 YP_008262287.1 transcriptional regulator HE999704.1.gene1202. Protein 3e-36 41
CFSAN002050_22100 YP_008262287.1 transcriptional regulator AE000516.2.gene3505. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_22100 YP_008262287.1 transcriptional regulator VFG0596 Protein 5e-56 54
CFSAN002050_22100 YP_008262287.1 transcriptional regulator VFG1390 Protein 1e-42 43