Gene Information

Name : CFSAN002050_22025 (CFSAN002050_22025)
Accession : YP_008262272.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4229629 - 4230309 bp
Length : 681 bp
Strand : -
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGCAGCGTATTTTAATCGTTGAAGACGAACAAAAAACAGGTCGTTACCTGCAGCAGGGACTGGTTGAGGAAGGCTATCA
GGCCGATCTCTTTAATAATGGCCGCGATGGTCTCGGGGCCGCGTCGAAGGGACAGTATGATTTGATAATACTGGACGTGA
TGCTGCCTTTCCTCGACGGGTGGCAAATCATCAGCGCACTGAGGGAGTCCGGGCACGAAGAACCGGTCCTGTTTTTAACC
GCAAAGGACAACGTGCGGGACAAAGTGAAAGGACTGGAGCTTGGCGCAGATGACTACCTGATTAAGCCCTTTGATTTTAC
GGAGCTGGTTGCACGTGTAAGAACCCTACTGCGCCGGGCACGCTCGCAGGCCGCAACAGTCTGCACCATCGCCGATATGA
CCGTTGATATGGTGCGCCGGACCGTGATCCGTTCGGGGAAGAAGATCCATCTCACCGGTAAAGAATACGTTCTGCTTGAG
TTGCTGCTGCAACGCACCGGAGAAGTGTTACCCAGGAGTCTTATCTCGTCCCTGGTCTGGAACATGAATTTTGACAGTGA
TACGAATGTGATTGATGTCGCCGTGAGACGTCTGAGAAGTAAAATTGATGATGACTTTGAGCCAAAACTGATCCATACCG
TTCGCGGTGCCGGATATGTCCTGGAGATCAGAGAAGAGTGA

Protein sequence : 
MQRILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQIISALRESGHEEPVLFLT
AKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARSQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLE
LLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIREE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-49 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-48 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_22025 YP_008262272.1 transcriptional regulator BAC0308 Protein 1e-95 100
CFSAN002050_22025 YP_008262272.1 transcriptional regulator BAC0638 Protein 1e-55 64
CFSAN002050_22025 YP_008262272.1 transcriptional regulator BAC0197 Protein 9e-60 63
CFSAN002050_22025 YP_008262272.1 transcriptional regulator BAC0083 Protein 4e-59 62
CFSAN002050_22025 YP_008262272.1 transcriptional regulator BAC0111 Protein 6e-57 60
CFSAN002050_22025 YP_008262272.1 transcriptional regulator BAC0125 Protein 6e-55 58
CFSAN002050_22025 YP_008262272.1 transcriptional regulator BAC0347 Protein 1e-49 55
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_010079.5776364.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_002952.2859858.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_007622.3794948.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_003923.1003417.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_013450.8614146.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_002951.3238224.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_007793.3914065.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator NC_002758.1121390.p0 Protein 2e-30 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator AE015929.1.gene1106. Protein 2e-25 42
CFSAN002050_22025 YP_008262272.1 transcriptional regulator HE999704.1.gene1528. Protein 2e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_22025 YP_008262272.1 transcriptional regulator VFG0596 Protein 6e-50 55
CFSAN002050_22025 YP_008262272.1 transcriptional regulator VFG1390 Protein 6e-35 44
CFSAN002050_22025 YP_008262272.1 transcriptional regulator VFG1389 Protein 2e-29 42