Name : CFSAN002050_21500 (CFSAN002050_21500) Accession : YP_008262169.1 Strain : Salmonella enterica CFSAN002050 Genome accession: NC_021818 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 4128847 - 4131336 bp Length : 2490 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGAGTTGTACCGGTTGCCGGACGCGACGCG GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATCCCCCAAGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCTCCTTCACGCTGGAGCGACGGCGTCACC GCCGGCCTGCTCGATTACAGCCTGATGGCCAACCGCTATATGCCGCAGCAGGGGGAGACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGGTTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG CATCACAGTCCGATTTTTATCTACCGCAGACGTATCTGTTCCGTGCCCTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGATTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTACC GCCCTCTCTTCAGGGGTATGCCCCGAAAATCAGCGGCATTGCGAACAGTAATGCACAGGTTACCGTCAGCCAGAATGGCC GCATTCTGTACCAGACCCGAGTGTCACCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACATGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTTGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGTCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGCTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCATGGGAAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTTTCCATGCCGGAGTACCTGCAGCGTCGGGCCACCGACGGCGGC GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTACAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC GGTAAGCCGGCTCAATTACTGGAATGCGCAGTCCAACAATAACTACATGCTCAGCTTCAACAAAGTGTTCAGTCTCGGCG ACCTTCAGGGGCTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGGAGTCAGAACCAGGTCTACGCC ACCATCAGTATCCCGTGGGGCGACAGCCGTCAGGTGAGCTACAGCGTACAGAAAGATAACCGGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGATACCACATGGAACATCAGCGCCGGTCATAACCGCTATGACACCGGCAGTA ACAGCAGCTTTAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAGGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACGGCCACCGCCCACGGCGCCGCCTTCAGCCAGTCGATGGCCGG GAATGAGCCTCGCATGATGATAGATACCGGAGACGTGGCCGGTGTGCCGGTGAATGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGGCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC GTGGACGTCAGCAGCTCCGTCGTCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAAATTGACGCCAGCCAAGG GGAGCAGGTGCTCGGTCATATCCGACTGGCTGATGGCGCCAGTCCACCGTTTGGCGCTCTGGTAGTGTCCGGGAAAAGCG GCAGAACCGCGGGGATGGTCGGAGATGACGGTTTGGTCTACCTGACAGGCCTCAGCGGGGAAGACCGCCGGACCCTGAAT GTGTCCTGGGATGGCCGGGTGCAGTGCAAACTCACCCTGCCGGAAACGGTGACACTCAGTCGGGGGCCGCTGTTACTGCC CTGCAGATAA Protein sequence : MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMANRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGKKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVVSQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKSGRTAGMVGDDGLVYLTGLSGEDRRTLN VSWDGRVQCKLTLPETVTLSRGPLLLPCR |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-125 | 41 |
papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-124 | 41 |
papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 3e-124 | 41 |
papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-125 | 41 |
papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-125 | 41 |
papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-125 | 41 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
CFSAN002050_21500 | YP_008262169.1 | fimbrial usher protein | VFG1548 | Protein | 9e-126 | 41 |
CFSAN002050_21500 | YP_008262169.1 | fimbrial usher protein | VFG0884 | Protein | 9e-126 | 41 |
CFSAN002050_21500 | YP_008262169.1 | fimbrial usher protein | VFG0895 | Protein | 1e-125 | 41 |