Gene Information

Name : CFSAN002050_21500 (CFSAN002050_21500)
Accession : YP_008262169.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : fimbrial usher protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4128847 - 4131336 bp
Length : 2490 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG
CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA
TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGAGTTGTACCGGTTGCCGGACGCGACGCG
GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC
CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA
CCTTCATTATCCCCCAAGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCTCCTTCACGCTGGAGCGACGGCGTCACC
GCCGGCCTGCTCGATTACAGCCTGATGGCCAACCGCTATATGCCGCAGCAGGGGGAGACCTCTACCAGCTACAGCCTCTA
CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGGTTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG
CATCACAGTCCGATTTTTATCTACCGCAGACGTATCTGTTCCGTGCCCTGCCAGCACTGCGCTCAAAACTGACGCTCGGA
CAGACGTACCTCAGCTCCGCTATTTTTGATTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTACC
GCCCTCTCTTCAGGGGTATGCCCCGAAAATCAGCGGCATTGCGAACAGTAATGCACAGGTTACCGTCAGCCAGAATGGCC
GCATTCTGTACCAGACCCGAGTGTCACCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT
GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACATGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG
ACAGGTTCGCTATAAGGTTGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGTCCTGACTTTC
TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG
TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGCTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT
GCCGCATGGGAAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG
CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTTTCCATGCCGGAGTACCTGCAGCGTCGGGCCACCGACGGCGGC
GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTACAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC
GGTAAGCCGGCTCAATTACTGGAATGCGCAGTCCAACAATAACTACATGCTCAGCTTCAACAAAGTGTTCAGTCTCGGCG
ACCTTCAGGGGCTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGGAGTCAGAACCAGGTCTACGCC
ACCATCAGTATCCCGTGGGGCGACAGCCGTCAGGTGAGCTACAGCGTACAGAAAGATAACCGGGGCGGCCTGCAGCAGAC
CGTGAATTACAGCGATTTCCATAACCCGGATACCACATGGAACATCAGCGCCGGTCATAACCGCTATGACACCGGCAGTA
ACAGCAGCTTTAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAGGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG
TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACGGCCACCGCCCACGGCGCCGCCTTCAGCCAGTCGATGGCCGG
GAATGAGCCTCGCATGATGATAGATACCGGAGACGTGGCCGGTGTGCCGGTGAATGGCAACAGCGGGGTGACCAACCGCT
TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGGCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC
GTGGACGTCAGCAGCTCCGTCGTCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAAATTGACGCCAGCCAAGG
GGAGCAGGTGCTCGGTCATATCCGACTGGCTGATGGCGCCAGTCCACCGTTTGGCGCTCTGGTAGTGTCCGGGAAAAGCG
GCAGAACCGCGGGGATGGTCGGAGATGACGGTTTGGTCTACCTGACAGGCCTCAGCGGGGAAGACCGCCGGACCCTGAAT
GTGTCCTGGGATGGCCGGGTGCAGTGCAAACTCACCCTGCCGGAAACGGTGACACTCAGTCGGGGGCCGCTGTTACTGCC
CTGCAGATAA

Protein sequence :
MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA
AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT
AGLLDYSLMANRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG
QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD
VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ
SAALGIGQNMGLLGALSADVTRSDARLPHGKKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG
DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA
TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ
YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED
VDVSSSVVSQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKSGRTAGMVGDDGLVYLTGLSGEDRRTLN
VSWDGRVQCKLTLPETVTLSRGPLLLPCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 1e-125 41
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 2e-124 41
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 3e-124 41
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 2e-125 41
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 2e-125 41
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 2e-125 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_21500 YP_008262169.1 fimbrial usher protein VFG1548 Protein 9e-126 41
CFSAN002050_21500 YP_008262169.1 fimbrial usher protein VFG0884 Protein 9e-126 41
CFSAN002050_21500 YP_008262169.1 fimbrial usher protein VFG0895 Protein 1e-125 41