|
Name : CFSAN002050_21105 (CFSAN002050_21105) Accession : YP_008262092.1 Strain : Salmonella enterica CFSAN002050 Genome accession: NC_021818 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 4035416 - 4038061 bp Length : 2646 bp Strand : + Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGCTTCTAAGCGCCTCCCCTTATAGCGCGTCAGGCAAAGACATCGAATTTAATACCGATTTCCTCGATGTAAAAAATCG CGATAACGTTAACATTGCACAGTTTTCTCGTAAGGGTTTTATTCTGCCAGGCGTCTACCTTTTACAAATTAAAATTAACG GACAGACTCTGCCGCAGGAATTTCCTGTTAACTGGGTTATTCCAGAACATGATCCACAAGGAAGTGAGGTTTGCGCAGAA CCAGAATTAGTTACGCAATTGGGTATAAAACCGGAACTCGCGGAAAAACTCGTCTGGATAACGCACGGCGAACGACAATG TCTGGCGCCAGATTCACTGAAAGGCATGGATTTTCAGGCTGACCTGGGACACTCCACGCTGCTGGTGAATTTACCCCAGG CGTATATGGAATACAGCGATGTCGACTGGGACCCACCCGCCCGCTGGGATAATGGTATTCCCGGCATCATTCTGGATTAC AACATTAATAATCAGCTCCGCCACGATCAAGAAAGCGGCAGCGAAGAGCAAAGCATCAGCGGCAACGGGACGTTAGGCGC GAACCTGGGCGCATGGCGACTGCGGGCCGACTGGCAGGCCAGCTACGACCATCGTGACGATGACAAGAACACTTCCACCC TCCACGATCAGAGCTGGAGCCGCTACTACGCCTATCGCGCACTACCGACGCTCGGGGCCAAACTTACGCTGGGCGAAAGC TATCTCCAGTCCGATGTTTTCGACAGCTTTAACTATATCGGTGCCAGCGTCGTTTCTGACGATCAGATGCTGCCGCCGAA ACTGCGCGGCTATGCGCCGGAGATCGTGGGCATTGCGCGCTCTAATGCAAAAGTCAAAGTCTCCTGGCAGGGGCGCGTAC TGTATGAAACGCAGGTGCCCGCAGGACCGTTCCGTATTCAGGATCTCAACCAGTCCGTTTCCGGTACGTTGCACGTCACC GTGGAAGAGCAGAACGGTCAGACCCAGGAGTTTGACGTTAACACCGCATCGGTTCCCTTCCTGACGCGCCCCGGCATGGT GCGCTACAAGATGGCGCTGGGCCGCCCGCAGGACTGGGATCATCACCCCATTACCGGCACATTCGCCTCGGCGGAAGCTT CGTGGGGGGTCACCAACGGCTGGTCGCTATATGGCGGCGCAATTGGAGAAAGCAACTATCAGGCCGTGGCGCTGGGAAGC GGTAAGGATCTTGGCGTGGTGGGCGCGGTGGCGGTCGACATTACGCACTCCATCGCCCACATGCCGCAAGACGACGGGTT TGACGGCGAAACGCTGCAGGGTAACTCATATCGCATCAGCTATTCCCGTGACTTTGATGAAATCGACAGCCGACTAACCT TTGCCGGATACCGCTTCTCAGAAAAGAACTTCATGAGCATGAGCGACTACCTGGATGCGAAAACCTATCATCATCTCAAT GCTGGTCACGAAAAAGAACGCTATACGGTCACCTATAACCAGAACTTCCGTGAACAGGGCATGAGCGCCTATTTCAGCTA CTCACGCAGTACCTTCTGGGACAGCCCGGATCAGAGTAACTATAACCTGTCTCTTTCCTGGTACTTCGACTTAGGGTCGA TAAAAAATCTCAGTGCGTCGCTGAACGGCTATCGCAGCGAATATAACGGTGATAAAGATGATGGCGTCTATATCTCGCTG TCTGTTCCCTGGGGCAATGATTCCATCAGCTACAACGGTACGTTTAACGGTAGTCAACACCGTAATCAGCTCGGCTATTC CGGCCACAGCCAGAACGGCGATAACTGGCAGCTTCACGTCGGGCAGGATGAACAAGGCGCGCAGGCAGACGGTTATTACA GCCATCAGGGCGCGCTGACGGACATCGATCTGAGCGCGGATTATGAAGAAGGATCGTACCGTTCGCTGGGTATGTCGCTG CGCGGCGGCATGACGCTGACCACCCAGGGCGGCGCGCTACACCGGGGAAGTTTAGCGGGCAGCACACGTTTGCTGGTTGA TACCGACGGCATTGCGGACGTCCCCGTTAGCGGTAACGGCTCGCCAACCTCAACCAACATTTTCGGCAAGGCCGTGATTG CGGATGTCGGAAGCTATTCGCGCAGCCTGGCGCGTATCGATCTGAACAAATTGCCGGAGAAGGCGGAAGCTACTAAGTCG GTTGTGCAGATCACGCTCACCGAAGGCGCCATCGGCTACCGTCACTTTGACGTGGTCAGCGGCGAGAAAATGATGGCGGT TTTCCGGCTGGCAGACGGCGACTTCCCACCGTTCGGCGCCGAAGTGAAAAACGAGCGCCAGCAGCAGTTGGGCCTGGTGG CCGATGACGGCAACGCCTGGCTGGCGGGCGTAAAAGCCGGGGAAACATTGAAAGTCTTCTGGGATGGCGCGGCGCAGTGT GAAGCATCACTCCCGCCCACGTTTACACCGGAGCTATTGGCCAACGCGCTATTGCTGCCGTGCAAAATGCTGGAAGGTCA GCCCCCCACCGCACCGCAGAAAAGTTCTCCGCTGCCTGCGCAACCGCTAATCCAGGAACATACGCAAACCGATGGCCAAC CGGCCGCGCCGGTGGCGACAACCACTCAAACCCCGCCCATACCGCTGGCTGACAACCATGCGGTGAATCGCAAGGATATG GAATAA Protein sequence : MLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAE PELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDY NINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDKNTSTLHDQSWSRYYAYRALPTLGAKLTLGES YLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVT VEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGS GKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLN AGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISL SVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSL RGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKS VVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQC EASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDM E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 2e-172 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 3e-168 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-166 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 1e-166 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 6e-168 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 4e-168 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 3e-168 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CFSAN002050_21105 | YP_008262092.1 | fimbrial usher protein | VFG1548 | Protein | 2e-168 | 45 |
| CFSAN002050_21105 | YP_008262092.1 | fimbrial usher protein | VFG0884 | Protein | 3e-168 | 45 |
| CFSAN002050_21105 | YP_008262092.1 | fimbrial usher protein | VFG0895 | Protein | 2e-168 | 45 |
