Gene Information

Name : CFSAN002050_13400 (CFSAN002050_13400)
Accession : YP_008260591.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : pathogenicity island 2 effector protein SseD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2447693 - 2448280 bp
Length : 588 bp
Strand : +
Note : may be involved in the translocation of effector proteins into the host cell; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCGCCTTCCTTGTTAACACCTTCTTCCACTCCATCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCA
ATATCATGCGCGACTATAACGTAGTAAAACAACAGCTGGCCTGGGGGCTACAGGTCAATGTTTTACAGACGCAAATGAAA
ACAATTGATGAAGCGTTTAGAGCATCAATGATTACTGCGGGTGGCGCAATATTGTCGGGCGTGCTGACGATAGGATTAGG
GGCCGTAGGCGGGGAAACCGGCCTTATAGCGGGTCAAGCCGTAGGCCACACTGCTGGAGGCGTCATGGGCCTGGGGGCCG
GTGCAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCCTATAATAAATCC
CTGACGGAAATTATGGAGAAAGCAACTGAAATTATGCAACAAATCATGGGCGTGGGGTCGTCACTGGTTGCGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRNIMRDYNVVKQQLAWGLQVNVLQTQMK
TIDEAFRASMITAGGAILSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGAAQRQSDQDKAIADLQQNGAQSYNKS
LTEIMEKATEIMQQIMGVGSSLVAVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 6e-63 95
sseD AAC28882.1 SseD Virulence SPI-2 Protein 3e-62 95
sseD CAA12188.1 SseD Virulence SPI-2 Protein 4e-63 95
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 8e-63 93
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 8e-63 93
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 3e-62 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_13400 YP_008260591.1 pathogenicity island 2 effector protein SseD VFG0502 Protein 2e-63 95