Gene Information

Name : CFSAN002050_06590 (CFSAN002050_06590)
Accession : YP_008259261.1
Strain : Salmonella enterica CFSAN002050
Genome accession: NC_021818
Putative virulence/resistance : Virulence
Product : outer membrane usher protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1026668 - 1029289 bp
Length : 2622 bp
Strand : +
Note : involved in fimbria production; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGCGTAATCAGCTTTTCATGACGCGATATTACTCCAGCGTAGCTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGC
ACTGGCGCCTGCGCCGGGGTGGGCGGAAAACTATTTCAACCCGGCGTTTCTGTCTGACGACCCGTCTGCGGTGGCCGACT
TATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGGATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCGACC
AGAGACATTGCCTTCCAGGCGGTGAAGACGACGGGAAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGAC
GCCTGAAATGCTTAAAAATATGGGAGTAAACACCGGGGCGTTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGG
ATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGCTTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCG
GCGATGGTTGCCAGCGCCAGAGGCTATATCCCACCGCAATACTGGGATGAAGGTATTAACGCGTTGCTATTGAATTACAC
CTTTACCGGCGCGAATAGTCAGGATCGGAGCCCAGGCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCC
TTAATCTGGGGGCCTGGCGGTTACGCGACTACTCCACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGG
CAGCACATCAGTACTTATCTGGAACGTGATGTGGTCTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTC
CGCATTATTCGACAGCCTTCCTTTTCGCGGGCTACAACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAGGGCT
TCGCGCCGACCATTCACGGCATTGCCAGAAGCAACGCGCAAGTGACCATTCGGCAAAACGGCTACATCATCAATCAGCGC
TATGTGCCGCCCGGGGCATTTACTATTAATGATCTCTATCCTACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGA
ATCCGACGGTTCTATTAATCGCTATAACGTGCCCTATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGTTGAAGTATG
CGGCGACGGTGGCGGAGTATCGCAGCGATAGTAGTCAAAAAGAGAAGGTGAAATTCAGTCAGGCGACCTTGATATGGGGG
TTACCGCATGGTTTTACGCTGTATGGCGGAACACAACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAA
TCTGGGCGATTGGGGCGCGGTGTCGCTGGATGTCACCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGC
AATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCACAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACC
TCGGGCTTTTACACGCTGGATGATACCACGTGGAAACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAA
AAGCAGGCCGGAATGGGCGGATTATTACAATCTTTATTACACCAGGAGGGGGAAAGTACAACTCGATATCAATCAACAGC
TAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGTCAGCAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAG
GTGGGATACAGCGATACGCTGGCGGGGATTGCATGGAGCGTTTCTTACAACAATAACAAATCCGCAGGCGATGCGGAGCG
CGATCAAATTTTCGCGCTGAATATCTCGGTGCCGCTAAGTCAATGGCTGCAACACGATGATGAGGTCACGCGCCATCACA
ATGTTTACGCTACCTTTAGCACCAGTACGGACAAACAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTGCTG
GACGAAAACAATCTTAGTTACAACATACAGCAAGGCTATCAGAATCACGGTATTGGCGAAAGCGGCGCCGCCAGCCTGGA
ATACGATGGCGCGAAAGGCAACGCCAACATTGGCTATAACGTTAGCGATAACGGTGATTACCAGCAGGTGAACTATGGCC
TGAGCGGCGGCCTGGTGGCGCACGCGCATGGAGTGACGCTAAGCCAGCCGTTGGGCAATACCAATATTTTGATTGCCGCG
CCGGGCGCAGCCAACGTCGGCGTTGTCGACCAGCCGGGTATTCATACAGACGCGCGTGGCTATGCGGTGGTGCCGTATGC
GACGACATATCGCCAAAACCGTATGGCGCTGGACGTTAACGCCATGGCTGATGATGTCGATATTGATGACGCGGTGACTC
GCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCCCGCTTTAAAGCGCGGGTTGGCGCGCGTGCCCTGGTAACGCTGAAT
CATAACGGTAAGCCTGTACCCTTTGGCGCAACGGTGACGGTGAATGATCGCCATGCGGAGGCGATTGTTGACGAAGCCGG
GGAGGTCTATCTTTCCGGGTTGTCAGCGCAAGGCGTTCTGCACGTTCGCTGGGGGAACCTGCCGGATCAACAGTGCGTCG
CGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTGAGTCGACAACATGCGGAGTGTCATTAA

Protein sequence :
MRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLAT
RDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDISIPQA
AMVASARGYIPPQYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRLRDYSTWNANSGDQNSDSDW
QHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQR
YVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKFSQATLIWG
LPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLAQSGTNLQLMGYRYST
SGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQ
VGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDKQHNVTQNAGLSGTLL
DENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAA
PGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVTLN
HNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHLSSSRQILSRQHAECH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 51
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN002050_06590 YP_008259261.1 outer membrane usher protein VFG0876 Protein 0.0 52
CFSAN002050_06590 YP_008259261.1 outer membrane usher protein VFG1645 Protein 0.0 50
CFSAN002050_06590 YP_008259261.1 outer membrane usher protein VFG0912 Protein 0.0 50
CFSAN002050_06590 YP_008259261.1 outer membrane usher protein VFG0446 Protein 1e-178 49
CFSAN002050_06590 YP_008259261.1 outer membrane usher protein VFG0454 Protein 3e-163 43