Gene Information

Name : CFSAN001921_23980 (CFSAN001921_23980)
Accession : YP_008258053.1
Strain :
Genome accession: NC_021815
Putative virulence/resistance : Resistance
Product : MFS transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 43426 - 44625 bp
Length : 1200 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
GTGAAACCCAACAGACCCCTGATCGTAATTCTGAGCACTGTCGCGCTCGACGCTGTCGGCATCGGCCTGATTATGCCGGT
GCTGCCGGGCCTCCTGCGCGATCTGGTTCACTCGAACGACGTCACCGCCCACTATGGCATTCTGCTGGCGCTGTATGCGT
TGATGCAATTTGCCTGCGCACCTGTGCTGGGCGCGCTGTCGGATCGTTTCGGGCGGCGGCCGGTCTTGCTCGTCTCGCTG
GCCGGCGCTGCTGTCGACTACGCCATCATGGCGACGGCGCCTTTCCTTTGGGTTCTCTATATCGGGCGGATCGTGGCCGG
CATCACCGGGGCGACTGGGGCGGTAGCCGGCGCTTATATTGCCGATATCACTGATGGCGATGAGCGCGCGCGGCACTTCG
GCTTCATGAGCGCCTGTTTCGGGTTCGGGATGGTCGCGGGACCTGTGCTCGGTGGGCTGATGGGCGGTTTCTCCCCCCAC
GCTCCGTTCTTCGCCGCGGCAGCCTTGAACGGCCTCAATTTCCTGACGGGCTGTTTCCTTTTGCCGGAGTCGCACAAAGG
CGAACGCCGGCCGTTACGCCGGGAGGCTCTCAACCCGCTCGCTTCGTTCCGGTGGGCCCGGGGCATGACCGTCGTCGCCG
CCCTGATGGCGGTCTTCTTCATCATGCAACTTGTCGGACAGGTGCCGGCCGCGCTTTGGGTCATTTTCGGCGAGGATCGC
TTTCACTGGGACGCGACCACGATCGGCATTTCGCTTGCCGCATTTGGCATTCTGCATTCACTCGCCCAGGCAATGATCAC
CGGCCCTGTAGCCGCCCGGCTCGGCGAAAGGCGGGCACTCATGCTCGGAATGATTGCCGACGGCACAGGCTACATCCTGC
TTGCCTTCGCGACACGGGGATGGATGGCGTTCCCGATCATGGTCCTGCTTGCTTCGGGTGGCATCGGAATGCCGGCGCTG
CAAGCAATGTTGTCCAGGCAGGTGGATGAGGAACGTCAGGGGCAGCTGCAAGGCTCACTGGCGGCGCTCACCAGCCTGAC
CTCGATCGTCGGACCCCTCCTCTTCACGGCGATCTATGCGGCTTCTATAACAACGTGGAACGGGTGGGCATGGATTGCAG
GCGCTGCCCTCTACTTGCTCTGCCTGCCGGCGCTGCGTCGCGGGCTTTGGAGCGGCGCAGGGCAACGAGCCGATCGCTGA

Protein sequence : 
MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSL
AGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR
FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPAL
QAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 3e-161 100
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 2e-161 100
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 2e-161 100
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 2e-161 100
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 1e-161 99
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 1e-161 99
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 8e-101 63
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 8e-101 63
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 8e-101 63
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 8e-101 63
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-103 63
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 5e-74 49
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 1e-74 48
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 1e-74 48
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 1e-74 48
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 2e-74 48
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 2e-74 48
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 2e-74 48
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 2e-74 48
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 2e-74 48
tet(H) YP_005176248.1 tetracycline efflux protein, class H Not tested ICEPmu1 Protein 3e-68 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_011586.7045189.p0 Protein 9e-151 100
CFSAN001921_23980 YP_008258053.1 MFS transporter X75761.gene.p01 Protein 3e-160 99
CFSAN001921_23980 YP_008258053.1 MFS transporter CP001485.1.gene2821. Protein 6e-162 99
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_010410.6002597.p0 Protein 6e-162 99
CFSAN001921_23980 YP_008258053.1 MFS transporter AF534183.gene.p01 Protein 2e-158 99
CFSAN001921_23980 YP_008258053.1 MFS transporter Y19114.gene.p01 Protein 3e-127 80
CFSAN001921_23980 YP_008258053.1 MFS transporter AF133140.gene.p01 Protein 1e-103 63
CFSAN001921_23980 YP_008258053.1 MFS transporter AF133139.gene.p01 Protein 2e-105 63
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_010410.6002612.p0 Protein 1e-103 63
CFSAN001921_23980 YP_008258053.1 MFS transporter AF070999.gene.p01 Protein 4e-88 54
CFSAN001921_23980 YP_008258053.1 MFS transporter AY264780.2.gene3.p01 Protein 5e-81 54
CFSAN001921_23980 YP_008258053.1 MFS transporter Y19116.gene.p01 Protein 9e-78 53
CFSAN001921_23980 YP_008258053.1 MFS transporter L06940.gene.p01 Protein 2e-79 53
CFSAN001921_23980 YP_008258053.1 MFS transporter AY743590.gene.p01 Protein 1e-72 50
CFSAN001921_23980 YP_008258053.1 MFS transporter L06798.gene.p01 Protein 1e-68 49
CFSAN001921_23980 YP_008258053.1 MFS transporter AF121000.gene.p01 Protein 7e-70 48
CFSAN001921_23980 YP_008258053.1 MFS transporter AJ420072.gene.p01 Protein 7e-68 48
CFSAN001921_23980 YP_008258053.1 MFS transporter CP004022.1.gene2534. Protein 1e-69 48
CFSAN001921_23980 YP_008258053.1 MFS transporter AF038993.gene.p01 Protein 3e-70 48
CFSAN001921_23980 YP_008258053.1 MFS transporter V00611.gene.p01 Protein 2e-74 48
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_010558.1.6275971. Protein 6e-75 48
CFSAN001921_23980 YP_008258053.1 MFS transporter AB084246.gene.p01 Protein 9e-75 48
CFSAN001921_23980 YP_008258053.1 MFS transporter Y15510.gene.p01 Protein 4e-69 47
CFSAN001921_23980 YP_008258053.1 MFS transporter AF090987.gene.p01 Protein 3e-64 47
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_011595.7059241.p0 Protein 1e-54 44
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_011586.7043399.p0 Protein 1e-54 44
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_010410.6003291.p0 Protein 1e-54 44
CFSAN001921_23980 YP_008258053.1 MFS transporter AJ250203.gene.p01 Protein 2e-63 43
CFSAN001921_23980 YP_008258053.1 MFS transporter NC_009085.4918440.p0 Protein 2e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_23980 YP_008258053.1 MFS transporter VFG1036 Protein 6e-75 48