Gene Information

Name : CFSAN001921_24540 (CFSAN001921_24540)
Accession : YP_008258165.1
Strain :
Genome accession: NC_021815
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 148138 - 149709 bp
Length : 1572 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGGACACCTCACTTGCTCATGAGAACGCCCGCCTGCGGGCACTGTTGCAGACGCAACAGGACACCATCCGCCAGATGGC
TGAATACAACCGCCTGCTCTCACAGCGGGTGGCGGCTTATGCTTCCGAAATCAACCGGCTGAAGGCGCTGGTTGCGAAAC
TGCAACGTATGCAGTTCGGTAAAAGCTCAGAAAAACTTCGTGCAAAAACCGAACGGCAGATACAGGAAGCACAGGAGCGA
ATCAGCGCACTTCAGGAAGAAATGGCGGAAACGCTGGGTGAGCAATATGACCCGGTACTGCCATCCGCCCTGCGCCAGTC
TTCAGCCCGTAAACCGTTACCGGCCTCACTTCCCCGTGAAACCCGGGTTATCCGGCCGGAAGAGGAATGCTGTCCTGCCT
GTGGTGGTGAACTCAGTTCTCTGGGATGTGATGTGTCAGAGCAACTGGAGCTTATCAGCAGCGCCTTTAAGGTTATCGAA
ACACAACGTCCGAAACAGGCCTGTTGCCGGTGCGACCATATCGTGCAGGCACCAGTACCTTCAAAACCCATTGCACGCAG
TTATGCCGGAGCGGGGCTTCTGGCCCATGTTGTCACCGGGAAATATGCAGACCATCTGCCGTTATACCGCCAGTCAGAAA
TATACCGTCGTCAGGGAGTGGAGCTGAGCCGTGCCACACTGGGGCGCTGGACAGGTGCTGTTGCTGAACTGCTGGAGCCG
CTGTATGACGTCCTGCGCCAGTATGTGCTGATGCCCGGTAAAGTCCATGCTGATGATATCCCCGTCCCGGTCCAGGAGCC
GGGCAGCGGTAAAACCCGGACAGCCCGGCTGTGGGTCTACGTCCGTGATGACCGTAACGCCGGTTCACAGATGCCCCCGG
CGGTCTGGTTCGCGTACAGTCCGGACCGGAAAGGTATCCATCCACAAAATCACCTGGCCGGTTACAGCGGTGTGCTTCAG
GCCGATGCTTACGGTGGTTACCGGGCGTTATACGAATCCGGCAGAATAACGGAAGCCGCGTGTATGGCTCATGCCCGGAG
AAAAATCCACGATGTGCATGCAAGAGCGCCCACCTACATCACCACGGAAGCCCTGCAGCGTATCGGTGAACTGTATGCCA
TCGAGGCAGAGGTCCGGGGCTGTTCAGCAGAACAGCGTCTGGCGGCAAGAAAAGCCAGAGCCGCGCCACTGATGCAGTCA
CTGTATGACTGGATACAGCAACAGATGAAAACACTGTCGCGTCACTCAGATACGGCAAAAGCGTTCGCATACCTGCTGAA
ACAGTGGGATGCACTGAACGTGTACTGCAGTAATGGCTGGGTGGAAATCGACAACAACATCGCAGAGAACGCCTTACGGG
GAGTGGCCGTAGGCCGGAAAAACTGGATGTTCGCGGGTTCCGACAGCGGTGGTGAACATGCGGCGGTGTTGTACTCGCTG
ATCGGCACATGCCGTCTGAACAATGTGGAGCCAGAAAAGTGGCTGCGTTACGTCATTGAACATATCCAGGACTGGCCGGC
AAACCGGGTACGCGATCTGTTGCCCTGGAAAGTTGATCTGAGCTCTCAGTAA

Protein sequence : 
MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQER
ISALQEEMAETLGEQYDPVLPSALRQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIE
TQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEP
LYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQ
ADAYGGYRALYESGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAAPLMQS
LYDWIQQQMKTLSRHSDTAKAFAYLLKQWDALNVYCSNGWVEIDNNIAENALRGVAVGRKNWMFAGSDSGGEHAAVLYSL
IGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 0.0 100
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-115 67
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 1e-138 64
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 4e-139 64
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 2e-127 61
unnamed AAC31494.1 L0015 Not tested LEE Protein 2e-132 60
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 3e-132 60
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 2e-132 60
tnp AEA34686.1 transposase Not tested Not named Protein 2e-133 60
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 2e-131 60
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 2e-131 60
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 5e-132 60
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 4e-132 60
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 3e-132 60
unnamed AAL57570.1 unknown Not tested LEE Protein 2e-132 60
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 5e-132 60
unnamed AAL08460.1 unknown Not tested SRL Protein 2e-92 58
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 3e-111 55
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 3e-120 54
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 4e-111 54
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 4e-111 54
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 1e-72 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_24540 YP_008258165.1 transposase IS66 VFG1700 Protein 7e-116 67
CFSAN001921_24540 YP_008258165.1 transposase IS66 VFG0793 Protein 1e-132 60
CFSAN001921_24540 YP_008258165.1 transposase IS66 VFG1051 Protein 1e-92 58
CFSAN001921_24540 YP_008258165.1 transposase IS66 VFG1736 Protein 7e-91 54