Gene Information

Name : CFSAN001921_03570 (CFSAN001921_03570)
Accession : YP_008254117.1
Strain : Salmonella enterica CFSAN001921
Genome accession: NC_021814
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 716830 - 718071 bp
Length : 1242 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
GTGGCAAGAAAAACCAAGCCGTTAACGGATACGGAAATCAAAGCAGCCAAATCTAAAGATGCCGATTATCAGTTGTATGA
TGGTGACGGACTGACGCTGCTAATCAAATCCAGTGGCAGTAAGCTCTGGCAATTCCGTTATTACCGACCTCTGACAAAAC
AGCGAACTAAACAGAGCTTCGGTTCCTATCCTGCTGTCTCGCTTTCCGATGCTCGTAAGCTCAGAGCTGAATCCAAAGTA
TTACTGGCAAAAGGAATCGATCCTCAGGAATACCAAAAAGAACAGATAAGAAATTCTCAGGAGGCCAAAACCAACACTTT
CTTGTTAGTTGCCGAGCGTTGGTGGAATGTGAAGAAAGCCAGTGTAACCGAGGACTATGCTGATGATATCTGGCGTTCGC
TTGAAAGAGATATATTTCCCGCAATTGGCAACGTAAGCGTTACAGATATTAAAGCCCATACACTGGTTCAAGCCGTTCAA
CCCGTTCAGGCCCGAGGAGCACTGGAAACTGTCCGCCGTCTTTGCCAACGGATCAATGAAGTCATGATTTATGCCCAAAA
CACGGGCCTGATTGATGCAGTTCCCAGTGTTAATATTGGCAAAGCCTTCGAGAAACCTCAGAAAAAGAACATGCCCAGTA
TTCGTCCGGATCAGTTGCCTCAGTTGATGCAAACTATGCGTACGGCCAGTATCAGCCTGTCTACGCGGTGTCTGTTCATG
TGGCAACTTCTCACCATCACCCGCCCCGCAGAAGCCGCAGAAGCTCGGTGGAATGAGATCGATTTTGATGCTAACGAATG
GAAAATTCCAGCAGCCCGAATGAAAATGAACCGGGACCATACCGTTCCATTATCTGATGGGGCTCTGGCTATTCTGGAAA
TGATGAAGCCGCTCAGTGGTGGCCGAGATTTTATTTTTCCAAGCCGCATTAAGCCCACTCAGCCGATGAACAGTCAAACC
GTGAATGCTGCACTCAAGCGTGCCGGTTTAGGGGGAGTGCTGGTTTCACATGGTTTGCGTTCTATCGCCAGTACAGCCCT
CAATGAGCAAGGATTTCCTCCTGATGTCATTGAAGCCGCACTTGCTCATGTAGACAAAAATGAGGTACGTCGCGCTTATA
ACCGCAGTGATTATCTTGAGCAACGTAGGCCGATGATGCAATGGTGGGCTGATTTTGTTAAAAGAGCAGATAAAGGAAGC
ATGGTAGAATCTAGTGCCGGTGCATTAAAACTTGTTGTTTGA

Protein sequence : 
MARKTKPLTDTEIKAAKSKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGSYPAVSLSDARKLRAESKV
LLAKGIDPQEYQKEQIRNSQEAKTNTFLLVAERWWNVKKASVTEDYADDIWRSLERDIFPAIGNVSVTDIKAHTLVQAVQ
PVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISLSTRCLFM
WQLLTITRPAEAAEARWNEIDFDANEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGRDFIFPSRIKPTQPMNSQT
VNAALKRAGLGGVLVSHGLRSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVKRADKGS
MVESSAGALKLVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20803.1 integrase Not tested VPI Protein 1e-108 54
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-108 54
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 2e-108 54
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 2e-108 54
int AAK20773.1 integrase Not tested VPI Protein 1e-108 54
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-107 52
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 6e-85 46
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 6e-85 46
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-85 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_03570 YP_008254117.1 integrase VFG1092 Protein 3e-85 46