Gene Information

Name : CFSAN001921_03425 (CFSAN001921_03425)
Accession : YP_008254088.1
Strain : Salmonella enterica CFSAN001921
Genome accession: NC_021814
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 692394 - 693458 bp
Length : 1065 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGCCTAACCAACTGAAACCCTTAACAAATGTGGAGATCGCTGGCGCGAAGCCCCGTAGCACAGACTATGAGCTACGGGA
CGGTGAAGGCCTGTACTTGCTGGTTAAGACTTCAGGGAGGAAGGCCTGGCATTTCGAGTATTATCATCCCGTCACCAAAA
AGCGCACCAAAACCAGCCTTGGCCCTTACCCGGTCGTTACACTGGCCATGGCTCGCGAAACTCGCACGAAATACAGACGA
CTGCTCTATCAGGGCATCGATCCCCGTCAACACTTAGCAGGAATAGCTGAAGAAAAACGCATCCAGAATGAATGCACGCT
GGAAAAAGTTGCGGAACAGTGGCTCAAAGAGAAGAAACGGACCAGCGATCTTAGCGAAGATCACGCCAAAGATGTCTGGC
GCTCGCTGGAGATGCACGTCTTCCCCTCTCTGGGTAACACACCCGTTACCGAGATCCGCCCGAAGATGCTCAAGGAACAC
CTCACCCCGCTGGAAGAACAGGGCATCCTCGAAACGCTGCGGCGAGTCATCTCACGGCTTAATGAAATCTTCCGTTTTGC
CATCTCCGAAGAGCTCATCGAATTCAATCCGGCTGACAACCTGGTCGCCCGCTTCAAGAAACCAAAAAAGCAGAACATGC
CCGCCCTTCACCCCAGTGAACTGGGCAGGCTAATGCTGGCGCTACAGAACGCTTCTATCCGCAAGGAAACCCGCTGCCTT
ATCGAATGGGAGCTACTGACCTGGGTTCGCCCCGGCGAGGCCGTCAGCGCCCGCTGGTGCGACATCGACATGAAAAAAGC
AGAATGGCGCATCCCCGATACCTTTATGAAGATGAACCGTTCGCACACGGTGCCGCTTAGCAAACAGGCGCTGCGCGTTC
TTCAGATCATGGAGCCCGTCAGCCGCCATCGTCCGTGGGTCTTCCCCAGCATCCGCAAACCACTGGAGCATATGCACCAG
CAGACCGCGAACGCCGCGCTTATCCGCATGGGGTTCGGCGGCGAACTGGTCGCCCACGGCATGCGCAGCCGCCAGGACCG
CAGGCGCAGGTCATTTTCCCCGTGA

Protein sequence : 
MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRR
LLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEH
LTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL
IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQ
QTANAALIRMGFGGELVAHGMRSRQDRRRRSFSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 6e-67 45
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 6e-67 45
int AAK20773.1 integrase Not tested VPI Protein 4e-67 45
int AAK20803.1 integrase Not tested VPI Protein 4e-67 45
unnamed AAA82714.1 integrase Not tested VPI Protein 4e-67 45
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-65 43
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-55 41
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-55 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_03425 YP_008254088.1 integrase VFG1092 Protein 2e-55 41