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Name : CFSAN001921_01900 (CFSAN001921_01900) Accession : YP_008253791.1 Strain : Salmonella enterica CFSAN001921 Genome accession: NC_021814 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 375725 - 378214 bp Length : 2490 bp Strand : + Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGGGTTGTACCGGTTGCCGGACTCGACGCG GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATTCCCCAGGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCCCCTTCACGCTGGAGCGACGGCGTCACC GCCGGCCTGCTTGATTACAGCCTGATGGTCAACCGCTATATGCCGCAGCAGGGGGAAACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGATTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCTTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC GCCCTCTCTTCAGGGGTATGCCCCGAAAATTAGCGGCATTGCGAACAGTAATGCACAGGTCACCGTCAGCCAGAATGGTC GCATTCTGTACCAGACCCGGGTGTCGCCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACCTGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGCCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGTTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCATGGGCAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGACCACTGACGGCGGC GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTATAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC GGTAAGCCGGCTCAATTACTGGAACGCACAGTCCAACAATAACTACATGCTCAGCCTCAACAAGGTGTTCAGTCTCGGCG ACCTTCAGGGACTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGTAGCCAGAACCAGGTCTACGCC ACCATCAGTATCCCGTGGGGAGACAGTCGCCAGGTGAGTTACAGCGTACAGAAAGATAACCGGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGACACTACATGGAACATCAGCGCCGGTCATAACCGTTATGACACCGGCAGCA ACAGCAGCTTCAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAAGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACTGCCACCGCCCACGGTGCCGCTTTCAGCCAGTCGATGGCCGG GAATGAGCCCCGCATGATGATAGATACCGGAGACGTGGCCGGTGTGCCGGTGAACGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGCCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC GTGGACGTCAGCAGCTCCGTCATCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAGATTGACGCCAACCAGGG GGAGCAGGTGCTCGGTCATATCCGGCTGGCTGATGGCGCAAGTCCGCCGTTTGGCGCCCTGGTGGTGTCCGGGAAAACCG GCAGAACCGCGGGGATGGTCGGAGATGGCGGTCTGGCCTACCTGACAGGTCTCAGCGGGGAAGACCGCCGGACCCTGAAT GTGTCCTGGGATGGCCGGGTGCAGTGCAGACTCACCCTGCCGGAAACGGTGACACTCAGCCGGGGGCCGCTGTTACTGCC CTGCAGATAA Protein sequence : MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGLDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDANQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDGGLAYLTGLSGEDRRTLN VSWDGRVQCRLTLPETVTLSRGPLLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-124 | 41 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-124 | 41 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-124 | 41 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-124 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CFSAN001921_01900 | YP_008253791.1 | fimbrial usher protein | VFG1548 | Protein | 6e-125 | 41 |
| CFSAN001921_01900 | YP_008253791.1 | fimbrial usher protein | VFG0884 | Protein | 7e-125 | 41 |
| CFSAN001921_01900 | YP_008253791.1 | fimbrial usher protein | VFG0895 | Protein | 9e-125 | 41 |
