Gene Information

Name : CFSAN001921_17320 (CFSAN001921_17320)
Accession : YP_008256803.1
Strain : Salmonella enterica CFSAN001921
Genome accession: NC_021814
Putative virulence/resistance : Virulence
Product : outer membrane usher protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3541845 - 3544466 bp
Length : 2622 bp
Strand : -
Note : involved in fimbria production; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGCGTAATCAGCTTTTCATGACGCGATATTACTCCAGCGTAACTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGC
ACTGGCGCCTGCGCCGGGGTGGGCGGAAAACTATTTCAACCCGGCATTTCTGTCTGACGACCCGTCTGCGGTGGCCGACC
TATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGGATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCAACC
AGAGACATTGCCTTCCAGGCGGTGAAAACGACGGGAAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGAC
GCCTGAAATGCTTAAAAATATGGGGGTAAACACCGGGGCGTTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGG
ATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGCTTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCG
GCGATGGTTGCCAGCGCCAGAGGCTATATCCCACCGAAATACTGGGATGAAGGTATTAATGCGTTGCTATTGAATTACAC
CTTTACCGGCGCGAATAGTCAGGATCGGAGCCCAGGCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCC
TTAATCTGGGGGCCTGGCGGTTACGCGACTACTCCACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGG
CAGCACATCAGTACTTATCTGGAACGTGATGTGGTCTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTC
CGCATTATTCGACAGCCTTCCTTTTCGCGGGCTACAACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAGGGCT
TCGCACCGACCATTCACGGCATTGCCAGAAGCAACGCGCAAGTGACCATTCGGCAAAACGGCTACATCATTAATCAGCGC
TATGTGCCGCCCGGGGCATTTACTATTAATGATCTCTATCCTACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGA
GTCCGACGGTTCTATTAATCGTTATAACGTGCCCTATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGCTGAAGTATG
CGGCGACGGTGGCGGAGTATCGCAGCGATAGTAGTCAAAAAGAGAAGGTGAAATTCAGTCAGGCGACCTTGATATGGGGG
TTACCGCATGGTTTTACGCTGTATGGCGGAACACAACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAA
TCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCACCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGC
AATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCACAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACC
TCGGGCTTTTACACGTTGGATGATACCACGTGGAAACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAA
AAGCAGGCCGGAATGGGCGGATTATTACAACCTTTATTACACCAGGAGGGGGAAAGTACAACTCGATATCAATCAACAGC
TAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGCCAGCAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAG
GTGGGATACAGCGATACGCTGGCGGGTATTGCATGGAGCGTTTCTTACAACAATAACAAATCCGCAGGCGATGCGGAGCG
CGATCAAATTTTCGCGCTGAATATCTCGGTGCCGCTAAGTCAATGGCTGCAACACGGTGATGAGGTCACGCGCCATCACA
ATGTTTACGCTACCTTTAGCACCAGTACGGACAAACAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTGCTG
GACGAAAACAATCTTAGTTACAACATACAGCAAGGTTATCAGAATCACGGTATTGGCGAAAGCGGCGCCGCTAGCCTGGA
ATACGATGGCGCGAAAGGCAACGCCAATATTGGCTATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAATTATGGCC
TGAGTGGCGGCCTGGTGGCGCACGCGCATGGAGTGACGCTAAGCCAGCCGTTAGGCAATACCAATATTTTGATTGCCGCG
CCGGGCGCAGCCAATGTCGGCGTTGTCGACCAGCCGGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGC
GACAACATATCGCCAAAACCGTATGGCGCTGGACGTTAACGCCATGGCGGATGATGTCGATATTGATGACGCGGTGACTC
GCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCCCGCTTTAAAGCGCGGGTCGGCGCGCGTGCCCTGGTAACGCTGAAT
CATAACGGTAAGCCTGTACCCTTTGGCGCAACGGTGACGGTGAATGATCGCCATGCGGAGGCGATTGTTGACGAGGCCGG
GGAGGTCTATCTTTCCGGGTTGTCAGCGCAAGGCGTTCTGCACGTTCGCTGGGGGAACCTACCGGATCAACAGTGCGTCG
CGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTGAGTCGACAACATGCGGAGTGTCATTAA

Protein sequence :
MRNQLFMTRYYSSVTKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLAT
RDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDISIPQA
AMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRLRDYSTWNANSGDQNSDSDW
QHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQR
YVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKFSQATLIWG
LPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLAQSGTNLQLMGYRYST
SGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQ
VGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHGDEVTRHHNVYATFSTSTDKQHNVTQNAGLSGTLL
DENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAA
PGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVTLN
HNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHLSSSRQILSRQHAECH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 51
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_17320 YP_008256803.1 outer membrane usher protein VFG0876 Protein 0.0 52
CFSAN001921_17320 YP_008256803.1 outer membrane usher protein VFG1645 Protein 0.0 50
CFSAN001921_17320 YP_008256803.1 outer membrane usher protein VFG0912 Protein 0.0 50
CFSAN001921_17320 YP_008256803.1 outer membrane usher protein VFG0446 Protein 1e-178 49
CFSAN001921_17320 YP_008256803.1 outer membrane usher protein VFG0454 Protein 3e-163 43