Gene Information

Name : CFSAN001921_10235 (CFSAN001921_10235)
Accession : YP_008255420.1
Strain : Salmonella enterica CFSAN001921
Genome accession: NC_021814
Putative virulence/resistance : Virulence
Product : regulatory protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2092911 - 2094137 bp
Length : 1227 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGTTTAAAGAAGAAAGACGTCATGCCATCATTAATTTACTGATAAAGGATAATAGTGTTAGCGTCAGTAAACTTTCAGA
CCTTTATAAGGTTAGCCAGGAGACTATTCGTTCCGATCTACGCTATTTCCAGAAATCAGGTATGCTTCAGCGTTGCTATG
GCGGAGGGATTTTAAACCGTGACGCGCTGAGTAAGCTTATCACTGAAAATAAGATTGATATCTCCAGCACTATCGCCACG
CCAATCCATCAGGATGCAAAACTGCGCCGGGAAAACCCAAAAAAAGCAGGCAAGGTGTGTGTTTTAGGCTCATTCAATAT
TGATGTTTCAGCAACCGTGCCGTGGTTTCCACAAAGCGGAGAATCCATTCTGGCCAGTCAATTTGGATTCTATCCTGGAG
GTAAAGGAGCCAACCAGGCTTTAGCGGCAAACAACGCTGGCGCTGCGGCACATTTTATTTTTAAAGTGGGCAAAGATCAG
TTCAGCGCATTTGCTATGAATCATATTATTCAATCAGGCATCACCTCATACAGCGCGTATCAAACAGATAAAGCACCCAC
CGGTAGCGCATTGATCTATGTCTCCGCCGTGGATGGCGATAATATTATCGCCATCTACCCTGGCGCCAATATGATGCTCA
CCACGCAAGAGATTAATGAGCAACACCGTTATATCGCCGAGTCTGACGTTATGTTAATGCAGCTCGAAACGAACATTGAA
GCGTTGACTGAATTTATTCGTCTGGGCAAACAAGAAAATAAAATGATCATGCTGAACCCTGCCCCCTATACGAAACAGGT
GACGCATTTATTATCTGATATTGACATCATCACGCCGAATGAAACTGAAGCCTCTTTTTTATCCGGTGTAACCATTACTG
ATATTAATGATGCAAAAAAAGCCGGAAATATTATTCTGCAATCCGGGGTGAAAAAAGTCATCATTACCCTTGGCGCCCGT
GGCTCTCTGATCTGTGAGCACGCCCGCACGTTGTATATTCCTGCGTGGAGCGCCGTGGTAAAAGATGCCGCTGGGGCCGG
TGACGCTTTTAATGGCGCCTTAGCCGCCGCGCTGGCGCGACAAGCAGACATGGTCGCAGCCATTCAATATGCCTCCGCTT
TCGCTTCTCTGGCGGTGGAACAAGTCGGTGCGTCGAGTATGCCTCAGCACTTGCAGGTTTTACATCGAATGCGTACCCAA
TCTAATAAAGTCATTCACATTAATTAA

Protein sequence :
MFKEERRHAIINLLIKDNSVSVSKLSDLYKVSQETIRSDLRYFQKSGMLQRCYGGGILNRDALSKLITENKIDISSTIAT
PIHQDAKLRRENPKKAGKVCVLGSFNIDVSATVPWFPQSGESILASQFGFYPGGKGANQALAANNAGAAAHFIFKVGKDQ
FSAFAMNHIIQSGITSYSAYQTDKAPTGSALIYVSAVDGDNIIAIYPGANMMLTTQEINEQHRYIAESDVMLMQLETNIE
ALTEFIRLGKQENKMIMLNPAPYTKQVTHLLSDIDIITPNETEASFLSGVTITDINDAKKAGNIILQSGVKKVIITLGAR
GSLICEHARTLYIPAWSAVVKDAAGAGDAFNGALAAALARQADMVAAIQYASAFASLAVEQVGASSMPQHLQVLHRMRTQ
SNKVIHIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf408 NP_460347.1 regulatory protein Not tested SPI-2 Protein 7e-165 100
ORF 408 CAB37417.1 - Not tested SPI-2 Protein 5e-165 100
rbsk YP_216390.1 DeoR family transcriptional regulator Not tested SPI-2 Protein 9e-164 99
APECO1_1076 YP_853096.1 carbohydrate kinase Not tested PAI IV APEC-O1 Protein 3e-56 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001921_10235 YP_008255420.1 regulatory protein VFG0483 Protein 3e-165 100