Gene Information

Name : SEEH1578_00590 (SEEH1578_00590)
Accession : YP_008248854.1
Strain :
Genome accession: NC_021811
Putative virulence/resistance : Virulence
Product : ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 105454 - 107007 bp
Length : 1554 bp
Strand : +
Note : COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

DNA sequence :
ATGGATAAATATAATCTGAAGGATGCTCTCCTTTTTATATCCAGGGGAGACACCCATGAAATTCTTATAGAAACAAACCA
GCGGACAAGGCCTGACGTACAAAGTAATCTCCAGGAGCTGCTAAAATTATATCCGGATATCAACCCAAAAGTAGTCTCGT
TGTCGGAGTTACAGGAGGCAGGTCAGGATGAGAAAAACAGAGGCCCGAAAGAACGAATTATTCATCTGAAAGACCTTGCT
GATGTCAGTGAAAGTGAGAAGAAAGTTCTATCTTATTTTGAAACTGCCAGAAAACTTGGTGCTTCAGATATTCATTTCTT
AATTTCAGAGTCTATTTTCAAAGTTCGCATGAGAATATTCGGTGAACTGCAGACTGTAGATGAAGATCAACCAGCACTGG
GCTATTCACTTTGCGCAACAGCCATTCTGTCAATGGCTGATGTCACTGAAACCAGTTTCTTCCCTCAAAGGGAGCAGGAT
GCGCGCCTGTCCCCACAATTAATGCGAAAAATAGGAATATTTGGTGCACGCTACAGTCACAGACCTACGGGAGACGGTCT
GATTGCAGTTATGCGCCTGATACCCGATGACGGAGATAAAGTTCCCACGTTTAAACAACTGGGCTTTATCCCGGAACAAA
TCCGGTTGCTGAACATAATGCTGCGCCGCCCGGAAGGAAAAATAGTCCTGTCAGGTCCAACCGGTTCCGGTAAATCGACA
ACGTTACGCAGCGCCTGCCGTGTATATCTTGACGATAATCAGGGGCGACACCTGCTAACAATCGAAGATCCGCTGGAAGG
ACAGATACTGGGAGCAACACAGACTCCGATTATCTGCGACAAATCCGACGAAGATGCCGTCAAACTGGCATGGAGTCGGG
CTATTTCATCGGCAATGCGACTTGACCCTGATGCCATCATGGAAGGGGAAATGCGCGATCTTATCTCGATGATGTCAACC
ACCTACGCGGCACAGACCGGGCACATAGTTCTGACGACATTACATACAAACTCAGCTCTGGGTATACCGGAGCGAATGAT
TACGATGGGTATGAATGCCGATCTTATTTGCGATGCGCAATTACTGATTGGGATGATCAGCCAGCGCCTTGTACCAACTC
TGTGTCCCTCCTGCCGTATTCCATGGGAAAAGCGAGCACCTGAACTTAGCGACGACGAGCGTGATTACCTTGAGCGGCAC
TGCAATAAAGATTCACTCTGCAGTACAGATAATATCTGGTTCCGAAATCATCACGGATGCTCTGAATGTAATCACGACGT
AATCATTAACGGCAGAAAGCGCGGTGAAATAGGTAAAGGCCTCACCGGCAGGACTGTAATTGCTGAGGTGATAGAACCTG
ATAACCGCTTATTTCAGATTCTGAAAACACGCGGCAAAGTTGCAGCACGTAAATACTGGCTGGAAAACATGAAAGGCATC
AGTCGTGTAGAGCATCTTCTTCGCCGTATCAATGAAGGTCTGGTAGACCCTCTTGAAGCCGACAGAATCATCCCTCTGGA
CGAAGACGAGCGCCTCAGCATCGATGATGTCTAA

Protein sequence :
MDKYNLKDALLFISRGDTHEILIETNQRTRPDVQSNLQELLKLYPDINPKVVSLSELQEAGQDEKNRGPKERIIHLKDLA
DVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQD
ARLSPQLMRKIGIFGARYSHRPTGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKST
TLRSACRVYLDDNQGRHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRLDPDAIMEGEMRDLISMMST
TYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQLLIGMISQRLVPTLCPSCRIPWEKRAPELSDDERDYLERH
CNKDSLCSTDNIWFRNHHGCSECNHDVIINGRKRGEIGKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGI
SRVEHLLRRINEGLVDPLEADRIIPLDEDERLSIDDV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YE3502 YP_001007663.1 putative type IV pilus protein Virulence YAPI Protein 7e-122 52
YpsIP31758_3731 YP_001402685.1 type IV secretion system protein Virulence YAPI Protein 2e-122 52
pilQ CAF28490.1 putative ATP binding protein Virulence YAPI Protein 1e-121 52
pilQ NP_458633.1 nucleotide-binding protein Virulence SPI-7 Protein 8e-131 52
pilQ NP_807844.1 nucleotide-binding protein Virulence SPI-7 Protein 8e-131 52
pilQ AAF14817.2 PilQ Virulence SPI-7 Protein 6e-131 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_00590 YP_008248854.1 ATP-binding protein VFG2313 Protein 3e-122 52