Gene Information

Name : SEEH1578_04845 (SEEH1578_04845)
Accession : YP_008245042.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 885444 - 886613 bp
Length : 1170 bp
Strand : +
Note : COG0582 Integrase

DNA sequence :
ATGGCTCTAACCGATATACAGATCAAACGTGCAAAACCACAAGACAAACCATACACATTGAACGATGGACAAGGTCTGTC
ATTGCTTATCAATCCTGATGGCTCGAAAGGCTGGCGTTTCCGTTTCCGGTTTGCAGGGAAAGCGCGTTTAATGTCATTTG
GCAGCTACGATTTAGTAAGCCTCGCAGAAGCACGTGAAAAGCGTGATATCGCCCGTAAGCAGGTTGCTAATGGCATTGAC
CCGGTAGAAGAACGTAAAGCTCAGAAACTTGCTCAGAAATTATCCACTAAAAACTCTTTTGAGAGCGTTAGCAGAGAATG
GCATGCAGCAAAAGCAGATCGTTGGACCTTAGCTTATCGAGAAGAAATTATTAAAACATTTGAACAGGATGTTTTTCCTT
TCATTGGTAAACGACCAATAGCTGAAATTAAACCCCTAGAACTGCTTGAAGTACTTAAACGCATAGAAAAACGTGGAGCG
TTGGAGAAAACAAGAAAAGTACGCCAACGGTGTGGAGAAGTGTTTCGCTACGCGATCATCACTGGCCGCGCTGAATACAA
TCCAGCACCTGATTTAGCTATCGCATTAGCAGTGCCGAAGCAAAAACATCATCCTTTTCTATCAGCAGAGGAACTCCCAC
ATTTTGTCAGAGATCTTGAGGCATACACTGGCAGCATAATCACTAAAAATGCAACCAAGATTGTGATGCTTACAGGTGTT
CGAACACAAGAGATGCGCTTTGCTACATGGCAAGAGCTTGATTTAGAAAAAGGGCTATGGGAGATACCAGCAGAGCGTAT
GAAGATGCGTAGGCCACACATAGTCCCGCTTTCAAGGCAGGTTATAAGGCTATTTCAACAACTAAAACCGATCACTGGTC
ACTATCCTTACATTTTCATTGGACGAAATAACCGAAAAAAGCCTATAAGTAAGGAGAGCATAAACCAAGTGATTGAGTTA
TTGGGATTTAAGGGGAGAATCACTGGCCATGGTTTCAGACACACTATGTCAACCATACTACACGAAGCCGGTTTTAATAG
TGCATGGATTGAAATGCAACTTGCCCACGTTGATAAGAACAGCATTCGCGGTGTATACAATCATGCACAATATCTTAATG
GTCGATCTCGTATGCTTCAGTTTTATGCAGATAAACTATACCCAAACTGA

Protein sequence :
MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVSLAEAREKRDIARKQVANGID
PVEERKAQKLAQKLSTKNSFESVSREWHAAKADRWTLAYREEIIKTFEQDVFPFIGKRPIAEIKPLELLEVLKRIEKRGA
LEKTRKVRQRCGEVFRYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFVRDLEAYTGSIITKNATKIVMLTGV
RTQEMRFATWQELDLEKGLWEIPAERMKMRRPHIVPLSRQVIRLFQQLKPITGHYPYIFIGRNNRKKPISKESINQVIEL
LGFKGRITGHGFRHTMSTILHEAGFNSAWIEMQLAHVDKNSIRGVYNHAQYLNGRSRMLQFYADKLYPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 1e-141 73
int ACU09430.1 integrase Not tested LEE Protein 2e-140 72
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-140 72
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-140 72
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-140 72
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-141 72
int AAD44730.1 Int Not tested SHI-2 Protein 9e-140 72
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-139 72
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-139 72
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-139 72
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-109 58
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 7e-111 55
intA AAB00935.1 integrase A Not tested vap locus Protein 7e-59 42
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 7e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_04845 YP_008245042.1 integrase VFG0783 Protein 1e-140 72
SEEH1578_04845 YP_008245042.1 integrase VFG0598 Protein 1e-139 72