Gene Information

Name : SEEH1578_23240 (SEEH1578_23240)
Accession : YP_008248694.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Virulence
Product : chaperone protein SicA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4753930 - 4754427 bp
Length : 498 bp
Strand : -
Note : COG0457 FOG: TPR repeat

DNA sequence : 
ATGGATTATCAAAATAATGTCAGCGAAGAACGTGTTGCGGAAATGATTTGGGATGCCGTTAGTGAAGGCGCCACGCTAAA
AGACGTTCACGGGATCCCTCAAGATATGATGGACGGTTTATATGCTCATGCTTATGAGTTTTATAACCAGGGACGACTGG
ATGAAGCTGAGACATTCTTTCGTTTCTTATGCATTTATGATTTTTACAACCCCGATTACACCATGGGACTGGCGGCGGTA
TGCCAACTGAAAAAACAATTTCAGAAAGCATGTGACCTTTATGCAGTAGCGTTTACGTTACTTAAAAATGATTATCGCCC
CGTTTTTTTTACCGGGCAGTGTCAATTATTAATGCGTAAGGCGGCAAAAGCCAGACAGTGTTTTGAACTTGTCAATGAAC
GTACTGAAGATGAGTCTCTGCGGGCAAAAGCGTTGGTCTATCTGGAGGCGCTAAAAACGGCGGAGACAGAGCAGCACAGT
GAACAAGAAAAGGAATAA

Protein sequence : 
MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAV
CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKTAETEQHS
EQEKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 6e-73 100
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 6e-73 100
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 6e-73 100
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 6e-73 100
sycB AAS66850.1 SycB Not tested SSR-1 Protein 4e-34 55
sicA AAS66869.1 SicA Virulence SSR-2 Protein 6e-28 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_23240 YP_008248694.1 chaperone protein SicA VFG0547 Protein 2e-73 100
SEEH1578_23240 YP_008248694.1 chaperone protein SicA VFG0988 Protein 4e-44 60
SEEH1578_23240 YP_008248694.1 chaperone protein SicA VFG2451 Protein 7e-46 60
SEEH1578_23240 YP_008248694.1 chaperone protein SicA VFG1769 Protein 3e-40 52