Gene Information

Name : SEEH1578_21295 (SEEH1578_21295)
Accession : YP_008248310.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Virulence
Product : Phage AlpA Prophage CP4-57 regulatory protein (AlpA)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4310877 - 4311104 bp
Length : 228 bp
Strand : -
Note : COG3311 Predicted transcriptional regulator

DNA sequence : 
ATGAGCTTATTGCCTCGGGAAAACGCACCCCAAAAAAGCTATAGACTTCTGAGAATATCAGAAGTGATTAATTTGACTGG
CTTACCCAAGTCGACAATTTATCTAAAGATAAAGAATGATGAATTTCCGAACCAAGTTTCTATCGGTTCTCGTTCTGTTG
CATGGGTGGAGCATGAAGTTAATGAATGGATAGAGAAGAATATTCTCAATAGAAAATTAAACTCCTAA

Protein sequence : 
MSLLPRENAPQKSYRLLRISEVINLTGLPKSTIYLKIKNDEFPNQVSIGSRSVAWVEHEVNEWIEKNILNRKLNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 6e-11 50
unnamed CAA21398.1 - Not tested HPI Protein 8e-11 50
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 4e-13 48
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 4e-13 48
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 2e-10 48
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 1e-12 47
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 1e-07 45
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 3e-11 41
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 4e-11 41
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 4e-11 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_21295 YP_008248310.1 Phage AlpA Prophage CP4-57 regulatory protein (AlpA) VFG1141 Protein 1e-13 48
SEEH1578_21295 YP_008248310.1 Phage AlpA Prophage CP4-57 regulatory protein (AlpA) VFG1118 Protein 1e-11 41