Gene Information

Name : SEEH1578_16330 (SEEH1578_16330)
Accession : YP_008247325.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Virulence
Product : type III secretion system protein YscR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3293569 - 3294216 bp
Length : 648 bp
Strand : +
Note : COG4790 Type III secretory pathway, component EscR

DNA sequence : 
ATGTCTTTACCCGATTCGCCTTTGCAACTGATTGGTATATTGTTTCTGCTTTCAATACTGCCTCTCATTATCGTCATGGG
AACCTCTTTCCTTAAACTGGCGGTGGTATTTTCGATTTTACGAAATGCTCTGGGTATTCAACAAGTTCCCCCAAATATCG
CACTGTATGGTCTCGCGCTTGTACTTTCCTTATTTATTATGGGGCCGACGCTATTAGCTGTAAAAGAGCGCTGGCATCCG
GTTCAGGTCGCTGGCGCTCCTTTCTGGACGTCTGAGTGGGACAGTAAAGCATTAGCGCCTTATCGACAGTTTTTGCAAAA
AAACTCTGAAGAGAAGGAAGCCAATTATTTTCGGAATTTGATAAAACGAACCTGGCCTGAAGACATAAAAAGAAAGATAA
AACCTGATTCTTTGCTCATATTAATTCCGGCATTTACGGTGAGTCAGTTGACGCAGGCATTTCGGATTGGATTACTTATT
TATCTTCCCTTTCTGGCTATTGACCTGCTTATTTCAAATATACTGCTGGCTATGGGGATGATGATGGTATCGCCGATGAC
CATTTCATTACCGTTTAAGCTGCTAATATTTTTACTGGCAGGCGGTTGGGATCTGACACTGGCGCAATTGGTACAGAGCT
TTTCATGA

Protein sequence : 
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHP
VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-86 100
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-86 100
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-86 100
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-85 99
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-85 99
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-57 61
lscR AAO18040.1 LscR Virulence TTSS locus Protein 7e-48 54
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-43 53
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-45 53
escR AAK26700.1 EscR Virulence LEE Protein 6e-45 53
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-45 53
escR AAL57527.1 EscR Virulence LEE Protein 6e-45 53
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-45 53
escR CAC81847.1 EscR protein Virulence LEE II Protein 6e-45 53
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-45 53
escR CAI43889.1 EscR protein Virulence LEE Protein 6e-45 53
escR AAC31528.1 L0049 Virulence LEE Protein 6e-45 53
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-43 53
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-45 53
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-45 52
escR AAC38369.1 EscR Virulence LEE Protein 4e-44 52
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-44 52
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-36 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-36 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-36 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-35 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-29 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-29 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-35 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-28 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-28 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-35 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-35 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-35 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 2e-31 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-35 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-30 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_16330 YP_008247325.1 type III secretion system protein YscR VFG0519 Protein 1e-86 100
SEEH1578_16330 YP_008247325.1 type III secretion system protein YscR VFG0188 Protein 1e-50 56
SEEH1578_16330 YP_008247325.1 type III secretion system protein YscR VFG0394 Protein 7e-47 55
SEEH1578_16330 YP_008247325.1 type III secretion system protein YscR VFG0827 Protein 3e-45 53
SEEH1578_16330 YP_008247325.1 type III secretion system protein YscR VFG0715 Protein 2e-44 52
SEEH1578_16330 YP_008247325.1 type III secretion system protein YscR VFG0044 Protein 5e-40 46
SEEH1578_16330 YP_008247325.1 type III secretion system protein YscR VFG1259 Protein 1e-31 42