Gene Information

Name : SEEH1578_16240 (SEEH1578_16240)
Accession : YP_008247307.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Virulence
Product : pathogenicity island 2 effector protein SseD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3281292 - 3281879 bp
Length : 588 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCGCCTTCCTTGTTAACGCCTTCTTCCACTCCATCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGATGAAGCTAATGGAGCTTGCCAAAAAGCTGCGCG
ATATCATGCGCAGCTATAACGTAGAAAAACAACGACTGTCCTGGGAACTGCAAGTCAATGTTTTGCAGACGCAAATGAAA
ACAATTGATCAAGCGTTTAAAGCATCAATGATTACTGCGGGTGGCGCCATGTTGTCGGGAGTGCTGACGATAGGATTAGG
GGCTGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGACACACCGCTGGGGGAGTCATGGGCCTGGGGGCCG
GTGTAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCC
CTGACGGACATTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMK
TIDQAFKASMITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKS
LTDIMEKATEIMQQIIGVGSSLVTVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 3e-65 99
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 3e-65 99
sseD AAC28882.1 SseD Virulence SPI-2 Protein 3e-64 98
sseD CAA12188.1 SseD Virulence SPI-2 Protein 3e-65 98
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 5e-65 98
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 6e-63 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_16240 YP_008247307.1 pathogenicity island 2 effector protein SseD VFG0502 Protein 1e-65 98