Gene Information

Name : SEEH1578_16200 (SEEH1578_16200)
Accession : YP_008247299.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Virulence
Product : pathogenicity island chaperone protein SpiC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3274824 - 3275225 bp
Length : 402 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTGAGGAGGGATTCATGCTGGCAGTTTTAAAAGGCATTCCATTAATTCAGGATATCAGGGCCGAAGGTAATAGCCG
ATCCTGGATAATGACTATTGATGGGCATCCTGCCAGAGGAGAAATCTTCTCAGAAGCATTTTCTATTTCTTTGTTCTTAA
ATGACCTGGAAAGCTTACCTAAGCCTTGTCTTGCCTATGTGACACTACTGCTTGCAGCACACCCGGACGTCCATGATTAT
GCTATACAGCTCACAGCGGATGGGGGATGGTTAAACGGTTATTATACCACAAGTAGTAGCTCTGAGCTTATTGCTATTGA
GATAGAAAAACACCTGGCTTTAGCTTGCATTTTAAAAAATGTAATACGCAATCACCATAAACTTTATTCGGGTGGGGTAT
AA

Protein sequence : 
MSEEGFMLAVLKGIPLIQDIRAEGNSRSWIMTIDGHPARGEIFSEAFSISLFLNDLESLPKPCLAYVTLLLAAHPDVHDY
AIQLTADGGWLNGYYTTSSSSELIAIEIEKHLALACILKNVIRNHHKLYSGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spiC AEZ06298.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 100
ssaB YP_216401.1 secretion system apparatus protein SsaB Virulence SPI-2 Protein 1e-52 100
spiC AEZ06296.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 2e-49 99
spiC AEZ06299.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 1e-49 99
spiC NP_456135.1 putative pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 2e-49 99
spiC NP_805064.1 pathogenicity island secreted effector protein Virulence SPI-2 Protein 2e-49 99
spiC AAC44300.1 SpiC Virulence SPI-2 Protein 9e-53 99
ssaB NP_460358.1 secreted effector protein Virulence SPI-2 Protein 1e-52 99
spiC AEZ06295.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 2e-49 99
spiC AEZ06297.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 5e-49 98
spiC AEZ06300.1 pathogenicity island 2 secreted effector protein Virulence SPI-2 Protein 5e-49 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_16200 YP_008247299.1 pathogenicity island chaperone protein SpiC VFG0494 Protein 4e-53 99