Gene Information

Name : SEEH1578_12160 (SEEH1578_12160)
Accession : YP_008246497.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein FimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2445468 - 2446160 bp
Length : 693 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGCTGAATAGTATAAAAGTAGGCTTTATTGTTCTTCTCACGTTATTTACTTCGCTGAACGTACAGGCGGCGGGGGGGAT
TGCATTAGGCGCCACGCGCGTTATTTATCCCTCGGCGGCGAAGCAGACTTCTCTGGCAATCAGTAATAGCGATACTCAAG
AACGTTACCTCGTCAATTCATGGATCGAAAATAACGCTGGGCAGAAAGAAAAAACGTTTATCGTTACGCCGCCTTTATTC
GTCAGCGAGCCCAAAAGTGAAAACACGCTGCGTATTATCTACGCCGGGCAACCGCTACCCGGGGATCGGGAGTCGTTATT
CTGGATGAACGTGAAAGCCATCCCGTCGGTCGATAAAAGTCATATTGAAGGAAAAAACGTTCTGCAACTGGCGATTCTGT
CGCGCATCAAACTGTTCGTGCGTCCGGCGAATTTGCCGCAGACGCCGGAAGACGCGCCGACCTTGCTGAAATTTTCCCGT
GTCGGCAACCATCTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATATCAGCGTGGGCGCGAAAAAGAT
TGATAACGTGATGATCGCGCCAAAAAGCGACATGCAAATTCCCTTACCGACTGGCGCGCAGGGCAACGTGACATTTCAGT
CCGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAA

Protein sequence : 
MLNSIKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENNAGQKEKTFIVTPPLF
VSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR
VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGNVTFQSVNDYGALTSATTASLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 8e-52 50
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-48 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_12160 YP_008246497.1 fimbrial chaperone protein FimC VFG0445 Protein 2e-104 100
SEEH1578_12160 YP_008246497.1 fimbrial chaperone protein FimC VFG0911 Protein 1e-48 50
SEEH1578_12160 YP_008246497.1 fimbrial chaperone protein FimC VFG1644 Protein 2e-48 50
SEEH1578_12160 YP_008246497.1 fimbrial chaperone protein FimC VFG0875 Protein 3e-53 48
SEEH1578_12160 YP_008246497.1 fimbrial chaperone protein FimC VFG0455 Protein 1e-40 42