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Name : SEEH1578_10100 (SEEH1578_10100) Accession : YP_008246087.1 Strain : Salmonella enterica 41578 Genome accession: NC_021810 Putative virulence/resistance : Virulence Product : fimbrial outer membrane usher protein StfC Function : - COG functional category : - COG ID : - EC number : - Position : 2031956 - 2034613 bp Length : 2658 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGGCTCACTATAAAAAATTTCGTCTGAGCACGCTTGCGGCCGTGGTGGGTATTGTTCTGGCTGTCGGTCCGGAAAATAG CTATGCGGAAGCGCCCATTCAATTTAATACCCGATTTCTTGATGTTAAAGATGATGCCAGCCTGGATCTCTCCCGTTTTT CCCGTAAAGGCTACATTATGCCGGGGAGCTATCATCTCCAGGTGCTGGTCAATCAGAGTCAAATTGCCCAGGATAATGTT ATTACGTATTCCGTTGATAATAACGATCCTGATAACACCTATCCCTGTTTATCGCCTGAACTGGTATCGCTGCTGGGGTT AAAACCTGAAATAGCAGATAAAATGATCTGGATAAATGCCGGTCAGTGTCTGCAACCAGATCAACTGGAAGGGATGGAAA CCCAAACGGATTTAAGCCAGTCAACGCTGACGGTGATTATTCCGCAGGCCTATCTGGAATACAGCGATGAAGAGTGGGAT CCACCTTCCCGCTGGGATGAAGGGATTCCCGGCGTATTATTTGACTACAACGTTAACAGCCAGTGGCGACATGCTGAACA TGATGACGGCGATGAGTATGACATCAGCGGCAACGGCACGGTGGGTGCCAACCTCGGCGCGTGGCGTTTGCGCGCGGACT GGCAGGCTAACTATCGTCACGAAAATGACAGCGAAGATAAAGACAACTTTGGCTCCAGTTCCGAACAGAACTGGGACTGG AACCGCTATTACGCCTGGCGGGCGATCCCGCAGCTCCGGGCGCAGCTAACGCTGGGCGAAGGATCGCTGGAATCCGATAT TTTCGACGGCTTTAACTATGTTGGCGGCAGCCTTATCACCGACGATCAGATGTTACCGCCTAATCTGCGCGGCTACGCCC CGGATATATCAGGCGTGGCGCGCACCAACGCCAAAGTCACCGTGACCCAGCGCGGGCGGGTGATTTATGAGTCGCAGGTC CCGGCTGGGCCGTTTCGCATTCAGGATATTAATGAAACGGTATCCGGCGATCTACACGTCAAAATTGAAGAACAAAGCGG TCAGGTGCAGGAATATGACGTCAGCACCGCCTCCATTCCGTTTCTGACCCGTCCCGGCCAGGTGCGCTACAAGTTGGCAG CCGGGCGACCGCAGGACTGGGATCACAATATGGAAGGCGGCTTTTTCACCTCAGCCGAAGCCTCCTGGGGGATCGCTAAC GGCTGGTCGCTGTACGGCGGTGCCATCGGTGAGCAGGATTATCAGGCGCTGGCGTTAGGACTGGGGCGCGATCTGGCGCT GCTGGGCGCGTTTTCCGTCGATGTCACCCATTCCCGTGCGACGCTGCCAGAGGGTAGCGCCTACGGCGACGGCACCATTC AGGGTAACTCGTTCCGTGCCAGCTACGCTAAAGATTTTGATGATATAGACAGCCGTCTGACGTTTGCTGGTTATCGCTTT TCCGAAGAAAACTACATGACGATGGACGAGTTTATCGATACGCATAATGACGATAACGATCGTCAGCGCACCGGCCACGA TAAAGAGATGTATACCCTGACGTACAGCCAGAACTTTTCGGCAATAAACGTCAACGCCTATATCAACTACACCCATCGCA CCTACTGGAATCAACCTAACCAGGACAGCTATAACCTGACGCTGTCGCACTATTTCGATGTCGGTGAGGTGCGCGGGATC AGTCTGTCGGTGAACGGTTTTCGCAACGAATATGACAATGAGCGTGATGACGGCGTGTACGTCTCGCTCAGTATTCCGTG GGGCAACAACCGCACGCTGAGCTACAACGGCTCCTTTAGCGATGACAACAACAGCAATCAGGTCGGCTATTACGAGCGCA TTGACGATCGCAATAACTACCAGATCAACGCTGGTCGCACGGATAACGGTGCGACTCTCGACGGCTACTACCGTCATCAA GCGAGCTATGCCGACATTGACGTCAGTGCGAACTATCAGGAAGGCGACTATACCTCCGGCGGGCTGAACATCCAGGGCGG CGCGACGCTGACTGCTAAAGGCGGGGCGCTGCACCGCACCAGCGTCAACGGCGGCTCGCGGCTGCTGGTGGATGTCGGCG ATGAAGCGAACGTACCCATCTCCGGCTACAGCACGCCGGTATATACCAACGCGTTTGGTAAAGCCGTCATTGTCGACGTC AACGACTACTACCGCAACCAGGTGAAAATCGACATTACCCAGTTGCCGGAAGACGCGGAAGCAATCCTCTCCATCGCTCA GGCGACCCTGACGGAAGGGGCGATCGGTTATCGCCGCATGGAGGTGCTCAGCGGTAAAAAAGCCATGGGCAGTATCCGCC TGCGCGATGGCGGCACACCCCCCTTCGGTGCGGAAGTTTACAACAGCCGCCAGCAACAGTTAGGGATCGTCGGCGAAGGC GGCAGCGTTTATCTGATCGGCATTAACCCCGGCGAGCGGTTGCAGGTGACATGGGAAGGTAAAACGCAGTGTGAAGCGGC GTTGCCCGATCCGCTGCCGGGCGATCTGTTTAGCGGCCTGTTGCTGCCGTGCATCGGCGACGCTTCATCACCTGAGGCAA CGCAGCCCGAAGAGAAACCATTACTCCAGCTTCATACGCAGCGGCGGACGTCTTCGACGCAACCCGAAGCGCTCTCTTCT CGTTATCCAACACATTGA Protein sequence : MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPGSYHLQVLVNQSQIAQDNV ITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQV PAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIAN GWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGI SLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINAGRTDNGATLDGYYRHQ ASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV NDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMGSIRLRDGGTPPFGAEVYNSRQQQLGIVGEG GSVYLIGINPGERLQVTWEGKTQCEAALPDPLPGDLFSGLLLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSS RYPTH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 6e-159 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-153 | 43 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 5e-153 | 43 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 7e-153 | 43 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-153 | 43 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-153 | 43 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-153 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SEEH1578_10100 | YP_008246087.1 | fimbrial outer membrane usher protein StfC | VFG1548 | Protein | 1e-153 | 43 |
| SEEH1578_10100 | YP_008246087.1 | fimbrial outer membrane usher protein StfC | VFG0884 | Protein | 1e-153 | 43 |
| SEEH1578_10100 | YP_008246087.1 | fimbrial outer membrane usher protein StfC | VFG0895 | Protein | 8e-154 | 43 |
