Gene Information

Name : SEEH1578_01295 (SEEH1578_01295)
Accession : YP_008244336.1
Strain : Salmonella enterica 41578
Genome accession: NC_021810
Putative virulence/resistance : Unknown
Product : Phage integrase, Phage P4-associated protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 142246 - 143349 bp
Length : 1104 bp
Strand : -
Note : COG0582 Integrase

DNA sequence : 
ATGAAGCTGACAGCTCGTCAGGTTGAAACTGCAAAACCTAAAGAGAAGCCCTACAAACTGGCTGATGGTGGTGGTCTTTA
CCTGCTGGTTAATCCCAATGGCAAAAGATACTGGCGTCTCAAATACCGTTCACTAGGTAAAGAGAAACTGCTCGCTATTG
GCGTTTACCCCGATGTTTTTTTAGCTGAAGCCAGAAGCAAGCGAGAGGATGCTAAAAGGACATTAGCGGCTGGCAACGAT
CCTTCTCTTGAACGGAAAATTGAGAAACTAAGTCGTCAACAAGATGCAGAAAACTCTTTTGAGGCTATCACGCGGGAGTG
GTATCAGCGTCGCTATGACCGCTGGTCTGTCTCCTGCCGCGAAGAGATGCTGAGAACCTTTGAAAAGGATGTGTTCCCTT
ATATCGGTCACCGGCCAATCAAAGATATCAAGCCGATGGAGTTGCTTGCAGTTCTTTCAAAGATAGAAGCAAGAAGGGCA
ACTGAGAAGGTCCGTAAGGTTCGCCAGCGCTGTGGAGAGGTCTGGAAGTATGCTGTTGTGACTGGCAGGGCCGAGTACAA
TCCAGCACCAGATCTAGCCAGCGCCGTGATTCCTCATGAGAAAGAGCACTATGCTTTTTTAACCCAAGATGAATTGCCTG
AGTTTCTTCGGACTCTCAACACCTATGCTGGTAGTGTACTTGTTAAGATTGCGATGCAATTGCTTATTTTAACGGGCGTA
AGGCTTGGGGAGTTGAGGCAAGCGGAGTGGCAGGAATTTGATTTTGAGAAAAAGGTTTGGAATGTACCAGCGGAACGCAT
GAAAATGCGCCGCCCTCATCTGGTTCCGTTATCAAGCCAGGCAATTGACCTACTTAATCAGCTTAAACCCATGACGGGAG
CAGGAGCGTTGCTGTTCCCAGGACGTAATAATCCTAAGAAACCGATGAGTGATATGGCATTGACTGTGTTGGTCAGGCGT
ATCGGCTACGCTGGGCGTGTTACGGGGCATGGATTCCGCCACACGATGAGTACCATTTTGCATGAGCAGGGATTTAATTC
GGCCTGGATTGAGATACAACTGGCTCATTTTATTTGCATTCAGAATGGGAGTTACACCCTTTAG

Protein sequence : 
MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVFLAEARSKREDAKRTLAAGND
PSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSCREEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRA
TEKVRKVRQRCGEVWKYAVVTGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV
RLGELRQAEWQEFDFEKKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFPGRNNPKKPMSDMALTVLVRR
IGYAGRVTGHGFRHTMSTILHEQGFNSAWIEIQLAHFICIQNGSYTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 5e-114 63
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-114 63
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 5e-108 62
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-113 62
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-113 62
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-113 62
int ACU09430.1 integrase Not tested LEE Protein 5e-113 62
int AAD44730.1 Int Not tested SHI-2 Protein 6e-113 62
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 7e-112 62
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 7e-112 62
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-112 62
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-101 56
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-67 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-65 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-65 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-64 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 6e-67 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 5e-67 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 4e-67 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-67 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-67 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 5e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SEEH1578_01295 YP_008244336.1 Phage integrase, Phage P4-associated protein VFG0783 Protein 3e-113 62
SEEH1578_01295 YP_008244336.1 Phage integrase, Phage P4-associated protein VFG0598 Protein 3e-112 62