Gene Information

Name : F504_4358 (F504_4358)
Accession : YP_008238087.1
Strain :
Genome accession: NC_021745
Putative virulence/resistance : Virulence
Product : Type III secretion inner membrane protein (YscR)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1122222 - 1122875 bp
Length : 654 bp
Strand : +
Note : FIG00023849; similar to flagellar export components

DNA sequence : 
ATGCAGAACGTTGAGTTCGCCTCCCTGATCGTGATGGCGGTGGCGATCGCGCTGCTGCCGTTCGCCGCCATGGTCGTCAC
CTCGTACACCAAGATCGTCGTGGTGCTCGGCCTGCTGCGCAATGCGCTCGGGGTCCAGCAGGTGCCGCCCAACATGGTCC
TCAACGGCATCGCGATGATCGTCTCGTGCTTCGTCATGGCGCCGGTCGGCATGGAAGCGATGCAGCGCGCGCACGTGCAG
ATCAACGCGCAGGGCGGCACCAACATCACCCAGGTGATGCCGCTGCTGGACGCGGCCCGCGACCCGTTCCGCGAATTCCT
GAACAAGCACACCAATGCGCGCGAGAAAGCGTTCTTCATGCGCTCCGCGCAGCAGCTGTGGCCGCCGGCCAAGGCCGCGC
AGCTCAAGGATGACGACCTGATCGTGCTGGCGCCGGCCTTCACGCTCACCGAGCTGACCTCGGCCTTCCGCATCGGCTTC
CTGCTCTACCTCGCCTTCATCGTGATCGACCTGGTGATCGCCAACCTGCTGATGGCGCTCGGGCTGTCGCAGGTGACGCC
GTCGAACGTGGCCATCCCGTTCAAGCTGCTGCTGTTCGTGGTGATGGACGGCTGGTCGGTGCTCATCCACGGCCTGGTCA
ACACCTATCGCTGA

Protein sequence : 
MQNVEFASLIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAPVGMEAMQRAHVQ
INAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAAQLKDDDLIVLAPAFTLTELTSAFRIGF
LLYLAFIVIDLVIANLLMALGLSQVTPSNVAIPFKLLLFVVMDGWSVLIHGLVNTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-73 78
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-72 76
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-74 74
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-74 74
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-74 74
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-73 73
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-73 73
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-74 73
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-46 48
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-34 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-34 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-33 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-33 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-32 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-32 42
escR AAK26700.1 EscR Virulence LEE Protein 3e-39 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-39 42
escR AAL57527.1 EscR Virulence LEE Protein 3e-39 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-39 42
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-39 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-38 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-39 42
escR AAC31528.1 L0049 Virulence LEE Protein 4e-39 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-39 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-39 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-39 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-35 41
escR AAC38369.1 EscR Virulence LEE Protein 4e-38 41
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
F504_4358 YP_008238087.1 Type III secretion inner membrane protein (YscR) VFG0394 Protein 2e-47 53
F504_4358 YP_008238087.1 Type III secretion inner membrane protein (YscR) VFG0188 Protein 5e-50 50
F504_4358 YP_008238087.1 Type III secretion inner membrane protein (YscR) VFG0044 Protein 1e-46 44
F504_4358 YP_008238087.1 Type III secretion inner membrane protein (YscR) VFG0827 Protein 2e-39 42
F504_4358 YP_008238087.1 Type III secretion inner membrane protein (YscR) VFG0715 Protein 2e-38 41
F504_4358 YP_008238087.1 Type III secretion inner membrane protein (YscR) VFG1012 Protein 2e-37 41