Gene Information

Name : F504_4355 (F504_4355)
Accession : YP_008238084.1
Strain :
Genome accession: NC_021745
Putative virulence/resistance : Virulence
Product : Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1118477 - 1120549 bp
Length : 2073 bp
Strand : +
Note : FIG00622716

DNA sequence :
ATGGCCAAAAAGAATGCAATCCAGGATTTCAGCGGCGAAATCGGTATCGCCGCGCTAGTGGTGGCGGTGGTGGCGCTGAT
GGTGCTGCCGCTGCCGACCATGCTGATCGACGCGCTGCTCGGTCTGAACATCACGCTCTCGGTCGTGCTGCTGATGGTGA
CGATGTACATTCCGTCGGCGACCTCGCTGTCGGCGTTTCCGTCGCTGCTGCTGTTCACGACGCTGCTGCGGCTGTCGCTG
AACATCGCCTCCACCAAGTCCATTCTGCTGCACGCGGACGCCGGCCACATCATCGAGAGCTTCGGCAAGCTGGTGGTGGG
CGGCAACCTGGTGGTGGGCCTGGTGGTGTTCCTGATCATCACCACGGTGCAGTTCATCGTGATCGCCAAGGGTTCGGAGC
GCGTGGCCGAGGTCGGCGCGCGCTTCACGCTGGACGCCATGCCCGGCAAGCAGATGAGCATCGACGCCGACCTGCGCGCC
GGCCACCTGTCGCCCGAAGAGGCCCGCAAGCGCCGCGCGCTGCTGGCGATGGAGAGCCAGCTGCACGGCGGCATGGACGG
CGCCATGAAGTTCGTCAAGGGCGACGCCATCGCCGGCCTGGTCATCACGCTGGTCAACATCCTGGCCGGCATCGTGATCG
GCATCACGTACCACAACATGACCGCCGGCGAGGCGGCCAACCGCTTCGCGGTGCTGTCGATCGGCGACGCCATGGTCTCG
CAGATCCCGTCGCTGCTGATCTCGGTGGCGGCCGGCGTGATGATCACCCGCGTCTCCGACGAAGAGCAGGCCCACAAGCA
GTCGTCGCTGGGCATGGAGATCGTGCGGCAGCTGTCCACCAGCGCGCGCGCCATGTTCACCGCCAGCGCCCTGCTGATGG
GCTTCGCGCTGGTGCCGGGCTTTCCGTCGTTCCTGTTCGTCGCGCTGGCGACGCTGATCTTCGTGTTCGGCTACACGCTG
CGTAACCGCGCCAAGGAGGGCGACGGCGACGAAGGCGACGCCCTGCCCGCGCTGCTGCGCGAGGGCTCGAAGGGCAAGGC
GCCGACCATCGCCGAACAGGCCCCGTCGTTTACCGTGCCGGTGGGCGTGCGGCTCGGCGCGGAGCTGGCCAAGGGCCTGG
ACGTGCCCGCCCTCGATACCGCCTTCCAGCAGGGCCGCCACGCGCTGGCCGAAGCGCTCGGCCTGCCCTTCCCCGGCATC
GCGATCTGGAAGGCCGACGCCCTGCAGCCCGACAGCTACGAGGTGCGCGTGCACGATATCCCGGGCGAGCCGGTCGCGGT
GCCGGACGGCCATCTGCTGATCCCGGATCTGCCGGAGGCGCTGCGCGCGCAGGCGGTCGAGGCCGCGGGCCTGCCCAATC
ATCCGGCGCCGCACTGGATCGCGCCGGCCCACGTGGCCCAGGACGCGGCGCTGAGCGCCACCGGCCAGCGCGTGGAGCGC
GTGATCGCCGATCACGTCGTGCACGTGCTGCGCCGGAGTGCGCACCTGTTCGTCGGCCTGCAGGAAACGCAGTGGATGCT
CGAGCGCGTCACCACCGACTACCCCGGCCTGGTGGCCGAAGCGCAGAAGGCCGTGCCGGCCCAGCGGATCGCCGACGTGC
TGCGGCGCCTGCTGGAAGAGCAGGTGCCCATCCGCAACATGCGCGCCATTCTCGAGAGCCTGGTGGTCTGGGGCCCGAAG
GAGAAGGACACGCTGATGCTGGTGGAATACGTGCGCGGCGACCTGGGACGGCAGATCGCGCACCAGGCCACCGGCGGCAC
CCGCCAGATGCCGGCCATCCTGCTGGACCTGTCGGTCGAGCAGACCGTGCGCCAGGCCATCAAGCCGACGCCGGCGGGCA
ACTTCCTGACGCTCGATCCGCAGCAGGTGGAGGCCATCATCATGCGCCTGCGCGGCATCATGCAGGGCAACCCCGTCGAG
ACGCCCTCGGCGCTGGCCATCGTGACCTCGATGGACATCCGCCGCTATGTCCGGCGCATGATCGAGCCGCACCTGCAGGC
GCTGAACGTGTATTCGTTCCAGGAGCTTGGCGGCTACGTCGACCTGCGCCCGGTCGGCAAGCTGGTGCTGTAG

Protein sequence :
MAKKNAIQDFSGEIGIAALVVAVVALMVLPLPTMLIDALLGLNITLSVVLLMVTMYIPSATSLSAFPSLLLFTTLLRLSL
NIASTKSILLHADAGHIIESFGKLVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRA
GHLSPEEARKRRALLAMESQLHGGMDGAMKFVKGDAIAGLVITLVNILAGIVIGITYHNMTAGEAANRFAVLSIGDAMVS
QIPSLLISVAAGVMITRVSDEEQAHKQSSLGMEIVRQLSTSARAMFTASALLMGFALVPGFPSFLFVALATLIFVFGYTL
RNRAKEGDGDEGDALPALLREGSKGKAPTIAEQAPSFTVPVGVRLGAELAKGLDVPALDTAFQQGRHALAEALGLPFPGI
AIWKADALQPDSYEVRVHDIPGEPVAVPDGHLLIPDLPEALRAQAVEAAGLPNHPAPHWIAPAHVAQDAALSATGQRVER
VIADHVVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAEAQKAVPAQRIADVLRRLLEEQVPIRNMRAILESLVVWGPK
EKDTLMLVEYVRGDLGRQIAHQATGGTRQMPAILLDLSVEQTVRQAIKPTPAGNFLTLDPQQVEAIIMRLRGIMQGNPVE
TPSALAIVTSMDIRRYVRRMIEPHLQALNVYSFQELGGYVDLRPVGKLVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 6e-142 58
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 6e-142 58
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 3e-140 57
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 7e-140 57
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 2e-138 57
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 3e-138 57
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 3e-140 57
lssD AAO18050.1 LssD Virulence TTSS locus Protein 2e-118 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
F504_4355 YP_008238084.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0064 Protein 2e-116 46
F504_4355 YP_008238084.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0198 Protein 8e-110 45
F504_4355 YP_008238084.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) VFG0384 Protein 7e-111 42