Gene Information

Name : lhe_0112 (lhe_0112)
Accession : YP_008235627.1
Strain : Lactobacillus helveticus CNRZ32
Genome accession: NC_021744
Putative virulence/resistance : Unknown
Product : methyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 114305 - 114835 bp
Length : 531 bp
Strand : +
Note : -

DNA sequence :
GTGGAAAACTGCAGTGGAATTTCTGTTAATTTTGATGATAAACTAATAGGTATGAATATTAAGATTGTTTGTGTTGGAAA
ATTAAAAGAAAAGTATTTTAAAGATGCGATTGCGGAATATAAAAAGCGGCTTAGTCGCTTTGCAAAAGTGTCGATTGTTC
AGGTGCCAGATGAAAAAGCACCGGAAAAATTTAGTGCAGCTGAAGATGAACGCGTCAAGCAGATCGAAGGCGAGCGGATT
CTGAGCAAGATTAAGGATAAGGAGTATGTCTACGTGACTGCGATTAAGGGTAAGCAGCGCAGCAGCGAGGAATTTGCAAA
GGAGATTCAGAATCTAGCTACGTATGGTCATTCGGATATTACCTTTGTGATTGGCGGCAGCTTGGGTACGAGCAATGCTG
TCAATAAGCGCGGGGATGACCTGATTAGTTTTGGCAAGCTGACGATGCCGCACCAGTTGATGCGGGTGGTATTGATTGAG
CAGATTTATCGTGCGTTCATGATTAATTCGGGTAGTCCGTATCATAAGTAG

Protein sequence :
MENCSGISVNFDDKLIGMNIKIVCVGKLKEKYFKDAIAEYKKRLSRFAKVSIVQVPDEKAPEKFSAAEDERVKQIEGERI
LSKIKDKEYVYVTAIKGKQRSSEEFAKEIQNLATYGHSDITFVIGGSLGTSNAVNKRGDDLISFGKLTMPHQLMRVVLIE
QIYRAFMINSGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 9e-39 57
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 9e-39 57
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 5e-38 56
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 5e-38 56
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 6e-35 56
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 5e-38 56
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 9e-38 56
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 5e-38 56
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 5e-38 56
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-37 56
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 5e-38 56
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 5e-38 56
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-38 56
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 5e-38 56
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-38 56
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 5e-38 56
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 9e-39 56
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 5e-38 56