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Name : lysS (M495_20300) Accession : YP_008231968.1 Strain : Serratia liquefaciens ATCC 27592 Genome accession: NC_021741 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 4245496 - 4247013 bp Length : 1518 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAGCAACAACCACAAGGCGCCGATCAGGCGTTGGATCTCAATAACGAGTTGCAGTCACGCCGTGAGAAACTGGC TGCGCTGCGCGAGAACGGCATTGCGTTCCCGAATGATTTTCGTCGTGACAACACGTCAGACAAGCTGCATGCAGCGTACG GCGAAAAAGACAACGAAGAGCTGGAAGCGCTGGGCGTAGAAGTCACAGTAGCCGGCCGCATGATGACGCGCCGTATTATG GGTAAAGCGTCATTTGTCACGCTGCAGGACGTTGGCGGTCGTATCCAGCTGTACGTTGCGCGCGACGATCTGGCGGAAGG CGTTTACAACGAACAATTCAAGAAGTGGGACCTGGGCGATATCGTTGGCGCGCGCGGCAAGCTGTTCAAGACCAAGACCG GCGAGCTGTCCATCCACTGCACCGAACTGCGTCTGCTGACCAAGGCCCTGCGCCCGCTGCCGGACAAGTTCCATGGTCTG GCGGATCAGGAAACCCGTTACCGTCAGCGTTACCTGGATCTGATCGCCAACGACGAATCGCGCAAGACCTTCCAGGTGCG CTCTCAGATCATGGCGGCAATGCGTAACTTCATGGTGGAGCGCGGCTTCATGGAAGTCGAAACTCCTATGATGCAGGTGA TCCCTGGCGGTGCTTCCGCACGTCCGTTTGTGACACACCACAATGCGCTGGACATCGATATGTACCTGCGTATCGCGCCA GAGCTGTACCTGAAGCGTCTGGTCGTCGGCGGTTTCGAGCGTGTGTTCGAGATCAACCGTAACTTCCGTAACGAAGGCGT TTCTCCGCGTCATAACCCAGAGTTCACCATGATGGAACTCTACATGGCTTACGCGGATTACAAAGATCTGATCGAACTGA CCGAATCCCTGTTCCGTACCCTGACCCAGAAAGTGCTGGGTAACACTCAGGTACAGTACGGTGATGAAGTGTTCGACTTC GGTAAGCCGTTTGAAAAGCTGACCATGACCGAAGCGATCAAAAAATACCGTCCGGAAACCGATCTGGCCGATCTGGCTGA CATGGGCAAAGCGGTTGCTATCGCCGAATCCATTGGCATCAAGGTTGAGAAGAGCTGGGGCCTGGGTCGCGTAGTGACCG AGATCTTCGAAGAAGTGGCGGAAAGCCATCTGATTCAACCGACCTTCATTACTGAATACCCGGCGGAAGTATCCCCGCTG GCACGTCGTAATGATAACAACCCGGAAATCACCGACCGCTTCGAGTTCTTTATCGGCGGCCGTGAAATCGGTAACGGCTT CTCCGAGCTGAATGACGCAGAAGACCAGGCGCAGCGCTTCGCTGACCAGGCTAATGCGAAAGACGCCGGCGATGATGAAG CCATGTTCTACGACGAAGACTACGTCACTGCGCTGGAGCACGGTTTACCGCCAACTGCAGGCCTGGGTATCGGTATCGAC CGTATGGTAATGCTGTTCACTAACAGCCACACCATCCGTGACGTGATCCTGTTCCCGGCCATGCGCCCGCAGAAATAA Protein sequence : MSEQQPQGADQALDLNNELQSRREKLAALRENGIAFPNDFRRDNTSDKLHAAYGEKDNEELEALGVEVTVAGRMMTRRIM GKASFVTLQDVGGRIQLYVARDDLAEGVYNEQFKKWDLGDIVGARGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL ADQETRYRQRYLDLIANDESRKTFQVRSQIMAAMRNFMVERGFMEVETPMMQVIPGGASARPFVTHHNALDIDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKDLIELTESLFRTLTQKVLGNTQVQYGDEVFDF GKPFEKLTMTEAIKKYRPETDLADLADMGKAVAIAESIGIKVEKSWGLGRVVTEIFEEVAESHLIQPTFITEYPAEVSPL ARRNDNNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFADQANAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-171 | 68 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 6e-93 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008231968.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-171 | 68 |
