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Name : smpB (M495_19255) Accession : YP_008231769.1 Strain : Serratia liquefaciens ATCC 27592 Genome accession: NC_021741 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 4024874 - 4025356 bp Length : 483 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGACAAAGAAAAAAGCTCACAAACCTGGTTCAGCCACCATTGCGCAAAACAAGCGAGCACGTTTCGAATACTTCATTGA AGAAGAAATCGAGGCGGGCCTGTCCCTGCAAGGGTGGGAAGTCAAATCGTTGCGTGCCGGCAAAGCCAACCTCAGCGACA GCTACGTGACCTTCCGTGACGGTGAAGCCTATCTTTTTGGCGCCACCATCACGCCGCTCAGCGTGGCTTCATCGCATGTG GTCTGCGACCCGACACGTACCCGCAAACTGCTGTTGAACAAACGCGAGCTGGATTCGCTGTTCGGCCGCGTTAACCGTGA AGGCTATACCGTTGTAGCCCTGTCCATGTATTGGAAAAATGCCTGGGTCAAGGTCAAAATCGGCGTAGCCAAAGGCAAGA AAGAACACGATAAGCGCGATGACATCAAAGATCGTGAGTGGCAGACGGCGAAAGCCCGTATCATGAAGCACGCCAACCGA TAA Protein sequence : MTKKKAHKPGSATIAQNKRARFEYFIEEEIEAGLSLQGWEVKSLRAGKANLSDSYVTFRDGEAYLFGATITPLSVASSHV VCDPTRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWKNAWVKVKIGVAKGKKEHDKRDDIKDREWQTAKARIMKHANR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-43 | 68 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-19 | 46 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 8e-16 | 45 |
