Gene Information

Name : M495_01715 (M495_01715)
Accession : YP_008228329.1
Strain : Serratia liquefaciens ATCC 27592
Genome accession: NC_021741
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 373465 - 374127 bp
Length : 663 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGAAACTGCTGATTGTGGAAGACGATGAGCTGCTGCAACAAGGGTTGGCACTGGCATTAGCCGGGGAAGGCTATGCCTG
TGACTGCGCCGCCACGGCAGCGGAGGCCAATGCTCTGCTCATCACCAGCCAATACAGCATGATTATCCTCGATCTGGGCT
TGCCCGACATGGATGGTGCCAGCCTGCTGCGGCAGTGGCGCCGCCAGCAAGTCGACCTGCCGGTGCTGATTTTGACCGCC
CGTGACGCACTGGAAGACCGGGTCGACGGGCTGGACGCCGGTGCTGACGATTACCTGGTCAAGCCCTTCGCGTTAGTTGA
ACTACAGGCGCGCGTGCGCGCCCTGATCCGCCGCTATCAGGGCCACAGCGACAATCTTATTCAGTTGGACGATCTCCAGC
TCAATCTCTCCAGCCAGCAGGTTTATGTTCAGCAGCAGCCGGTGGAGGTGACGCCGAAAGAATTCGCCATCCTCTCCCGC
CTGATGATGCGCGCCGGTCAAACGGTTAATCGCGAGCTGTTGCAGCAGGATCTCTATACCTGGCAGGATGATTTAGGCTC
CAATACGCTGGAAGTGCATATCCATAACCTGCGTCGTAAATTGGGCAAGGACCGCATCCGTACCGTTCGTGGCATTGGCT
ATCGTCTGGAATCCTCATCATGA

Protein sequence : 
MKLLIVEDDELLQQGLALALAGEGYACDCAATAAEANALLITSQYSMIILDLGLPDMDGASLLRQWRRQQVDLPVLILTA
RDALEDRVDGLDAGADDYLVKPFALVELQARVRALIRRYQGHSDNLIQLDDLQLNLSSQQVYVQQQPVEVTPKEFAILSR
LMMRAGQTVNRELLQQDLYTWQDDLGSNTLEVHIHNLRRKLGKDRIRTVRGIGYRLESSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-29 49
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-20 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M495_01715 YP_008228329.1 XRE family transcriptional regulator BAC0487 Protein 2e-46 67
M495_01715 YP_008228329.1 XRE family transcriptional regulator NC_002516.2.879194.p Protein 7e-22 45
M495_01715 YP_008228329.1 XRE family transcriptional regulator CP000647.1.gene1136. Protein 1e-21 44
M495_01715 YP_008228329.1 XRE family transcriptional regulator BAC0530 Protein 1e-21 44
M495_01715 YP_008228329.1 XRE family transcriptional regulator BAC0197 Protein 2e-20 43
M495_01715 YP_008228329.1 XRE family transcriptional regulator BAC0083 Protein 3e-21 42
M495_01715 YP_008228329.1 XRE family transcriptional regulator CP001918.1.gene2526. Protein 7e-22 42
M495_01715 YP_008228329.1 XRE family transcriptional regulator CP000034.1.gene2022. Protein 2e-21 41
M495_01715 YP_008228329.1 XRE family transcriptional regulator CP001138.1.gene1939. Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M495_01715 YP_008228329.1 XRE family transcriptional regulator VFG0473 Protein 3e-40 55
M495_01715 YP_008228329.1 XRE family transcriptional regulator VFG0596 Protein 3e-20 43
M495_01715 YP_008228329.1 XRE family transcriptional regulator VFG0475 Protein 2e-21 41