Gene Information

Name : M495_10350 (M495_10350)
Accession : YP_008230016.1
Strain : Serratia liquefaciens ATCC 27592
Genome accession: NC_021741
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2178817 - 2179677 bp
Length : 861 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :
ATGGAAACCCTGTATCAACTGCTCAGCGAGCCCTTCGCCTATCCCTTTATGCAGCGGGCAATCCTGGCCGCCATCGTGAC
CGGCGTGGTGTGTGCAGTGCTCTCTTGCTATCTGGTGCTCAAAGGCTGGTCGCTGATGGGTGACGCCATCTCGCATGCGG
TGCTGCCCGGTATCGTGGTGGCGTTCGTGCTCGGCATCCCAGTGGTGATAGGTGCCTTCTTCTCCGGTATTTTCTGTGCG
GTAGCTACCGGTTACCTGAAAGAAAACAGCCGGGTGAAAGAGGACACGGTGATGGGGATCGTTTTCTCCGGCATGTTTGC
CTTTGGCCTGGTGCTGTTTTCCCGTATCGATACCGATCAGCACCTCAGCCACATTCTGTTCGGCAATATGCTGGGCATTA
CCGACGCAGAGCTGAAACAGACGTTGCTGATGGCTGGCATTACGCTGCTGGTGGTGTTGCTGAAACGCAAAGATTTGATG
CTCTACTGTTTTGATCCCAACCATGCCAGGGTGATTGGCCTGCCGGTGAAACTGTTGCACTACGGGCTGCTGTGCCTGCT
GGCGCTGACGATTGTCGCCTCATTGCAGGCCGTCGGGGTCATTCTGGTGATTGCGATGTTGATTGCTCCAGGCATCATTG
CCTTCATGCTGTGCCGCAGCTTCGACCGCATGCTGATAGTCGCCACGGTGGTGTCTGTGTTCTCCTGCGTACTCGGCACC
TTGATCAGCTTCCACATTGACGGTGCCACCGGCCCCTGCATTGTGATAGTCCAGGCCATTCTGTTTGTGTTCGCCCTGCT
CTACAGTAAATTTAAACCGTTACAACGTCACGAAAATGGAATGCTCGACGCAAAACCTTGA

Protein sequence :
METLYQLLSEPFAYPFMQRAILAAIVTGVVCAVLSCYLVLKGWSLMGDAISHAVLPGIVVAFVLGIPVVIGAFFSGIFCA
VATGYLKENSRVKEDTVMGIVFSGMFAFGLVLFSRIDTDQHLSHILFGNMLGITDAELKQTLLMAGITLLVVLLKRKDLM
LYCFDPNHARVIGLPVKLLHYGLLCLLALTIVASLQAVGVILVIAMLIAPGIIAFMLCRSFDRMLIVATVVSVFSCVLGT
LISFHIDGATGPCIVIVQAILFVFALLYSKFKPLQRHENGMLDAKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-61 52
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-61 52
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-61 52
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-61 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-61 52
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-49 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-49 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 8e-49 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-49 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-49 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M495_10350 YP_008230016.1 iron ABC transporter permease BAC0442 Protein 5e-104 86
M495_10350 YP_008230016.1 iron ABC transporter permease BAC0352 Protein 7e-62 52
M495_10350 YP_008230016.1 iron ABC transporter permease BAC0351 Protein 4e-49 41
M495_10350 YP_008230016.1 iron ABC transporter permease BAC0441 Protein 7e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M495_10350 YP_008230016.1 iron ABC transporter permease VFG0528 Protein 6e-62 52
M495_10350 YP_008230016.1 iron ABC transporter permease VFG0527 Protein 3e-49 41