|
Name : lysS (J450_02020) Accession : YP_008219466.1 Strain : Mannheimia haemolytica D171 Genome accession: NC_021738 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 430292 - 431794 bp Length : 1503 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAAGTAGAAAATCAAGAATTAGATCTAAACGGTGAAATGTTAGCCCGCCGTGAAAAATTAAACAAAATCCGTGA GCAGGGTAACGCATTTCCAAATACATTCCGTCGTGATGCGTTAGCCAAAGATCTGCACGCTCAATATGATGCAGTGGAAG GTGAAACCTTAAAAGAACAGAATATTCAAGTGAAAGTTGCCGGTCGTATTATGTTAAAACGAGTAATGGGTAAGGCATCT TTCTTTACCATTCAAGATGTGAGCGGTGCGATTCAGCTTTATGTAGCTCGTGATAACTTAAGTGACAGCGTTTACGAAGA AAAAGTCAGCCTTTGGGATTTAGGCGACATTGTGGGCGTCGAAGGTGCGTTATTTAAAACCAAAACCGGTGAATTAACGG TTCGTTGCTCTGAAGTTCAACTTTTAACCAAGTCTTTACGCCCGTTGCCGGATAAACATCACGGTTTAACGGATTTAGAA ACTCGTTATCGTCAGCGTTATTTAGACTTGATTTCTAATGAAGAATCTCGCCGTACTTTTATGATCCGCTCGCAAGTAGT TTCAGGCATTCGCAAATTCTTCTTAGAAAGAGACTTTATTGAAGTTGAAACGCCAATGTTGCAAGTGATCCCGGGCGGTG CGGCAGCGAAACCGTTTATCACTCATCATAATGCGTTAGATGTGGATATGTATCTGCGTATTGCTCCAGAGCTTTACTTA AAACGTTTAGTTGTGGGTGGTTTTGAGCGAGTATTTGAGCTTAACCGTAACTTCCGTAACGAAGGGGTTTCAGTACGCCA CAATCCTGAATTTACAATGATTGAGTACTACCAAGCCTATGCGGATTATCACGATTTAATGGATAATACCGAAGAACTGT TACGCCAATTAGCCTTAGATATTCTTGGCACAACTGACGTACCTTATGGTGATTATGTATTCGATTTCGGTAAACCGTTT GAGCGTATTACGATGCACGATGCGATTGTGAAATATGGTAACGGCATTCAACGTGAAGATTTAGACAGCTTCGAGAAAAG TGTGGAAATTGCGAAAGGCTTAGGCATTGAAATTCAAAAATCTTGGGGTTTAGGCTCGGTAGTCAATGCGATTTTTGAAG AAGTGGCAGAACATCAATTAATTCAGCCAACTTTCTTGATGGCTCACCCGGCAGAAATTTCACCATTAGCTCGTCGTAAT GATGAAAACCCAGAGGTAACTGATCGTTTTGAGTTATTTATCGGTGGTCGTGAAATTGGTAATGGTTTCTCAGAATTAAA CGATGCAGAAGACCAAGCAGAGCGTTTTGATGCTCAAGTTGCGGCGAAAGATGCCGGTGATGATGAAGCAATGTTTAAAG ATGAAGACTTTATCGTGGCATTGGAACACGGTCTGCCGCCAACAGCGGGTGAAGGTTTAGGAATTGACCGCTTAGCAATG ATTTTCGCTAACGCCCCATCAATCCGTGATGTAATTTTATTCCCAGCGATGCGTCAGAAGTAA Protein sequence : MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKDLHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKAS FFTIQDVSGAIQLYVARDNLSDSVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFITHHNALDVDMYLRIAPELYL KRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPF ERITMHDAIVKYGNGIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRN DENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFIVALEHGLPPTAGEGLGIDRLAM IFANAPSIRDVILFPAMRQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-148 | 62 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-85 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_008219466.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-149 | 62 |
