Gene Information

Name : J450_09505 (J450_09505)
Accession : YP_008220888.1
Strain : Mannheimia haemolytica D171
Genome accession: NC_021738
Putative virulence/resistance : Virulence
Product : membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1965530 - 1966390 bp
Length : 861 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGCTTGATCTTTTATTAGAGCCTTTTACCTACAACTATATGCAAAAAGCGATTTTTGTCAGTATGGGCGTGGGGTTAGT
TTGTGCTTTTCTTTCCGCCTTTTTGATGTTAAAAGGCTGGTCTTTGATTGGTGATGCCTTATCACACGCTGTAGTGCCAG
GTGTTGCCATCGCTTATGCACTAAAATTGCCCTACGCCTTTGGTGCGTTTTTTTCCGGGATTTTGGCGGCATTATCGATT
CTTTGGGTAAAAAGCCTGACGAAAATTAAAGAAGATGCGGTTATCGGCTTTATTTTCACGACTTTTTTTGCGCTTGGTAT
GTTTATTGTTTCCCTCAATCCAACATCGGTTGATGTTAATTCGATTGTAATGGGAAATATTTTAGGCATTGCTGATGATG
ACTTGTGGCAGGTGGTACTGATTATTGCGATTTCGTTACTGGGTTTAATCCTATTTTGGAAGGATTTGCTACTCGTCTTT
TTTGACGAACACCACGCATTGTCAGTCGGGCTTTCGCCATTACGCTATAAAGTGATTTTCTTTACCTTATTAAGTGCCTG
TGTAGTAGTGGCTCTGCAAACGGTTGGGGCAATTTTGGTTATTGCGATGGTCGTCACGCCGGGAGCAACTGCTTATTTAC
TTACCGACCGTTTCCCTAGATTAGTGCTGATCGCAATGCTTATCGGCACGCTGACATCAGGGATTGGGGCATATTTAAGC
TACTTTTTAGACGGTGCAACCGGTGCGGTAATTGTGTGCTTACAAACCTTAATTTTCTTATTCGCATTCTGCTTTGCTCC
TAAATATGGCTTGATTACTCAAAAGCGGAAATTGCACCGTGTGGAGGTTCAAAATGCTTAA

Protein sequence : 
MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIGDALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSI
LWVKSLTKIKEDAVIGFIFTTFFALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRFPRLVLIAMLIGTLTSGIGAYLS
YFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKRKLHRVEVQNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-70 60
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-70 60
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-70 60
sitC NP_461784.1 permease Virulence SPI-1 Protein 8e-70 60
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-70 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
J450_09505 YP_008220888.1 membrane protein BAC0441 Protein 2e-81 71
J450_09505 YP_008220888.1 membrane protein BAC0351 Protein 4e-70 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
J450_09505 YP_008220888.1 membrane protein VFG0527 Protein 3e-70 60