Gene Information

Name : J450_06985 (J450_06985)
Accession : YP_008220405.1
Strain : Mannheimia haemolytica D171
Genome accession: NC_021738
Putative virulence/resistance : Virulence
Product : capsule polysaccharide transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1458527 - 1460617 bp
Length : 2091 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGCTCATTTCCCTTATTTTTTCGAACGGAATTTGTCGTATTCCGAATTTAGAACATTTTCTACCTGATTGTCGTATTAT
TCGAATACCTTCTTGGCGTAAGAAATTAGGTAATAAGGCTAAGGTAGATCAAATCATCGGCTGGGGGCTTCGTCCTTCAG
CGGTGGGAGCAAGAGCTTATGCACAAAAACACCAACTTCCTTATATTGCATTAGAAGACGGCTTTTTACGCTCATTAGGC
TTGGGTGTAAAAGGCTATCCGCCTTTTTCTCTAGTGTACGACGATGTCGGGATTTATTACGATACTACTTGTCCTTCCCG
TTTAGAAAAATTCCTGCTTGAACAGCCTTTGCAGGATCAAGAGCAAATTAAGCTTGCAGAGAAAGCTTTATCTCAAATCT
TAACTTATCAGCTTTCTAAATATAATCACGCATTAGATTTTAGTGAAATCCCCTCTATCAAAGAAAAAATCGTATTAGTT
ATTGACCAAACCTTTGGTGATATGGCGGTGAAATATGGCCAAGCGAGTGAAGTGGATTTCAATAAAATGTTGGAAACGGC
AATCAGTGAGAATCCAGAGGCTCAGATTTGGGTGAAAACTCACCCCGATGTATTAAGTGGCAAGAAGAAAGGCTATTTGA
CCGATTTGCCTCAATATGCTGATAGAGTTCGTATTATTACTGAAGATGTTAATCCGGCAAGCTTGATTAAATGGTGTGAG
AAAGTCTATTGCGTAACTTCGCAAATGGGCTTTGAGGCATTATTGTTAGGTAAAAAAGTGGTTACCTTTGGTGTGTCGTG
GTTTGCCGGTTGGGGGGTAACAGATGATCGGCATAACTCAGTTCAATTATTAATCCAACAGAAGAGACGGCAAGCACGCT
CATTGTTACAACTATTTTATGCAGCATATTTTGATTACAGTCGTTATATTAATCCGAATACGGGTGAAAAAGGCTCTATT
TTTGATGTGATTGAGTATCTGCACAAGGCGACAATACTCAACCGGCGTTTAAGCGGAAATGTATATTGTATAGGTATGTC
ATTATGGAAACAGGCTGTCATTAAGCCGTTTTTTAATTTGCCTCAATGCCGTTTACATTTTGTGCGTTCGCTAAATTCTT
TGAAAAAACGACCGCTTGCAGAGAATGCTAAAATTTTAGTGTGGAGTAATGGTAAGCCTGAAATTATACAATTTGCGAAA
GAAAATCATATTCCACTGTTGAGAATGGAAGATGGTTTTATCCGTTCGGTTGGACTTGGGGCAAATTTAGTTGCGCCACT
TTCTTTGGTAGTAGATGATTTAGGTATTTATTTTAATGCAGAGAATCCTTCCCGTTTGGAACAAATTTTATTGGAAGCGG
AGGATTTTTCTGAAAATGATTTGTCTTATGCTGAGGCATTAAGACAAAAATTAGTGGCCACCCATATTGGTAAATATAAT
GTCGGTAGTGGTGAGGTGCAGGTTAATGCCCAAGGCAAAAAAATAATTTTAGTACCGGGGCAGGTTGAAGATGACGCTTC
GATAAAGTCCGGTTCTCCACAAATTAAAAGAAATCTGGATTTACTGAAAAAAGTGAGGGAATTAAACCCTAGTGCCTATA
TTATTTATAAGCCTCACCCTGATGTGGTAAGTGGTAATCGAGTCGGTCAGATTCCTACGGCAGAAACACGCAGGTTTGCG
GATCAGATGGTGGATAATGCCAATATTTTAGATTGTATTTTAATTGCAGATGAAGTGCATACAATGACATCTTTAGCCGG
TTTCGAAGCATTATTAAGAGGTAAAAAAGTGCATTGCTACGGATTACCTTTTTATGCTGGTTGGGGATTGACGGAAGATA
GATTGAAGTCGGCACGCAGAGGTAAATCTTTGACATTATCTCAGTTAATTGCCGCAACATTGATATATTACCCTCTGTAT
GTTGATCCTATAAGCAGGCAGTTTATTGATGCCAATCAAGCGATTCATATATTGTCACAACAGAAACGAAACCTAACCAA
TCAAAGGATTAAACGTTCTTGGGTGAGTAAACAATATGGAAAATTACAGCATCTTTATCGTGCGTTTAAATATGCTTCCC
ACACTAAATAA

Protein sequence : 
MLISLIFSNGICRIPNLEHFLPDCRIIRIPSWRKKLGNKAKVDQIIGWGLRPSAVGARAYAQKHQLPYIALEDGFLRSLG
LGVKGYPPFSLVYDDVGIYYDTTCPSRLEKFLLEQPLQDQEQIKLAEKALSQILTYQLSKYNHALDFSEIPSIKEKIVLV
IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQYADRVRIITEDVNPASLIKWCE
KVYCVTSQMGFEALLLGKKVVTFGVSWFAGWGVTDDRHNSVQLLIQQKRRQARSLLQLFYAAYFDYSRYINPNTGEKGSI
FDVIEYLHKATILNRRLSGNVYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLAENAKILVWSNGKPEIIQFAK
ENHIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENPSRLEQILLEAEDFSENDLSYAEALRQKLVATHIGKYN
VGSGEVQVNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFA
DQMVDNANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLY
VDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKLQHLYRAFKYASHTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 0.0 58
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 5e-137 49
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 3e-137 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
J450_06985 YP_008220405.1 capsule polysaccharide transporter VFG0704 Protein 2e-179 60
J450_06985 YP_008220405.1 capsule polysaccharide transporter VFG0692 Protein 0.0 59
J450_06985 YP_008220405.1 capsule polysaccharide transporter VFG0259 Protein 0.0 58