Gene Information

Name : J450_06980 (J450_06980)
Accession : YP_008220404.1
Strain : Mannheimia haemolytica D171
Genome accession: NC_021738
Putative virulence/resistance : Virulence
Product : capsule polysaccharide transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1457272 - 1458504 bp
Length : 1233 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGGAACATTATTTAGATGAGCTAATCATCAATAGCCAGAGAATTTTATTGTTACAAGGCCCGATAGGCTCTTTTTTCAC
TGAGTTTGCCCGTTGGTTAGAAAGTGAGCAAAAAGAGGTCTTCAAGTTAAATTTTAATGGCGGAGATGAATATTTCTATC
CAAATAATAGCCCGAATACTTTTCCTTACTATGATAGCTTAGATAATTTTGAAGCCTATTTAATTCAGTTTTGCCAAACT
CATCAAATAGATAATATCTTATGTTTTGGCGATAATCGTTATTATCATAAAGTGGCTAAAAACGTTTGCTTGAAGTTAAA
GTTGGTCTTTTGGGCGTTTGAAGAAGGGTACTTTAGGCCAGAATATATTACGTTGGAAAAATGGGGTGTAAATGCTTTTT
CTCCAATCCCGAAAAATCACACTTTCTTTTTGCCTTATGTCGAGTTACCAGTAGTCAGTGAACCAGAAAAAGTAGCTAAA
GGCTTTAGATGTATGGCGGGAAAAGCAATCCCGTACTATTGGAATGCCTATAAAAAACGTAAAGCATACGCAAAATATAA
GCATCATCGTTTTCTGAATCTCAAATACTACCTTAATTTATGGACAAGGTCGGGAATTAAGCGAATATGTTATTGGTTAC
ATGATAAAGGATTTGCCAAGCGGGTAGAAAAAGGAGAGTTTGGTGAATTTTTCATTGTGCCTCTACAAGTTTATGATGAC
ACTCAAGTGAGGATTCATAGTGAACAAAAAAGTGTAGAGCGTTTTTTAAGGGAAGTGCTGAATTCCTTTGCCAAATTTGC
ACCGGCACATCTCAATTTAATTATTAAGCATCACCCGATGGATAGAGGATTTATAGATTATAAAATGGTGATTTATGAAT
TCTTAGAGCAATATCCCCAATTAAACGGTAGAGTTTTTTATATTCACGATGTGCCGTTACCTATCTTTTTACGTTATGGG
AAAGGAATGGTGACTTTAAATTCAACCAGTGGGCTTTCTGCATTGCTCCATAATATGCCGGTCAAAACCTTAGGTAGAGC
CAATTATGATTTTGAGGGATTAACCGATAAACAGCCATTAGATACTTTTTGGGCTAATCCTCAGCCACCTAATTCGGAAG
TATTTAAAGGCTACAGACAATTTCATTTACATAAAACGCATATTAACGGTAATTTTTACCATAAATCGATTTTGCGTTAT
CCTTATAATTGGGAAAATGAAGCACACAGGTGA

Protein sequence : 
MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLNFNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQT
HQIDNILCFGDNRYYHKVAKNVCLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYVELPVVSEPEKVAK
GFRCMAGKAIPYYWNAYKKRKAYAKYKHHRFLNLKYYLNLWTRSGIKRICYWLHDKGFAKRVEKGEFGEFFIVPLQVYDD
TQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIKHHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPIFLRYG
KGMVTLNSTSGLSALLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNFYHKSILRY
PYNWENEAHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipB NP_273146.1 capsule polysaccharide modification protein Not tested IHT-A Protein 2e-93 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
J450_06980 YP_008220404.1 capsule polysaccharide transporter VFG0705 Protein 1e-115 61
J450_06980 YP_008220404.1 capsule polysaccharide transporter VFG0693 Protein 1e-115 61
J450_06980 YP_008220404.1 capsule polysaccharide transporter VFG0260 Protein 9e-94 53