Gene Information

Name : LOCK908_2875 (LOCK908_2875)
Accession : YP_008207338.1
Strain : Lactobacillus rhamnosus LOCK908
Genome accession: NC_021725
Putative virulence/resistance : Unknown
Product : 50S m3Psi1915 methyltransferase RlmH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2845355 - 2845756 bp
Length : 402 bp
Strand : -
Note : -

DNA sequence :
ATGGACAAATTTGCAAAAGTTAAAATTGTCGAGGTGGCCGATGAAAAGGCGCCGGAGAATCTTTCCGAAGCCGAAATGGC
AGACGTAAAAGCCAAGGAAGGCGATCGGATTTTGAATAAGATCAAAGACAAAGAATGGGTAATCGCCTTGGCCATTGAAG
GTAAACAGCGACCTTCCGAAGTTTTTGCCAAAGAAATTGCCGATCTTGGTACATACGGGCATTCGGATATTACCTTCGTG
ATCGGCGGTTCGCTTGGCTTGTCACCAGCCGTGATGAAGCGGGCCAATGATACGCTTAGTTTCGGCAAGCTGACCATGCC
GCATCAGCTAATGCGGTTAGTATTAATGGAACAGATTTACCGGGCCTTTATGATTAATATCGGCAGTCCATATCACAAAT
GA

Protein sequence :
MDKFAKVKIVEVADEKAPENLSEAEMADVKAKEGDRILNKIKDKEWVIALAIEGKQRPSEVFAKEIADLGTYGHSDITFV
IGGSLGLSPAVMKRANDTLSFGKLTMPHQLMRLVLMEQIYRAFMINIGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-30 55
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-30 55
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-30 55
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-30 55
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-30 55
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-30 55
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-30 55
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-30 55
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-30 55
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-30 55
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-30 55
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-30 55
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-30 55
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-30 55
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 3e-24 54
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-29 54
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-30 54
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-26 52
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 5e-30 52