Gene Information

Name : LOCK908_2488 (LOCK908_2488)
Accession : YP_008206965.1
Strain : Lactobacillus rhamnosus LOCK908
Genome accession: NC_021725
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter, inner membrane permease protein SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2481047 - 2481940 bp
Length : 894 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTTCATTAGCTGAATTTTTCACCGCGTTAGGAAAATATGATTTCCTCCAAAGTGCGTTAATTACTGCCATCATGGT
AGGGATCATGTCCGGTTTGATTGGTAGCTTCATTATTTTGCGCGGCATGTCGTTGATGGGGGATGCAATTTCCCATGCGG
TGCTTCCGGGCGTTGCCGTTGCTTATATGCTGGGTGTCAACGTCATGATTGGGGCTTCGGTGTTTGGCATTATCGCCGCG
CTGTTGATCGGTTTTGTTGCGGCAAATAGTAAGATCAAAACCGATACCTCCATCGGCGTGGTGTTCAGTGCGTTTTATGC
GCTCGGATTCATTTTGATTTCGATGGCAGAAAGCGCTACGAACTTGCATCATATTCTGTTTGGTAATATTTTGGCGGTCA
GCGATAGTGATATTATGACCACCGCGGTTGTGTTAGGGATTGTCATTTTATTCGTGGTGTTGTTCTATAAGGAATTGTTG
ATCACATCGTTTGATAATACCTTTGCTAAAACTTATGGGTTGAATACCACTGCGATTCATTACGCGTTGATGCTGGTTTT
AACCTTGGTAACTGTTTCGGCCTTGCAGACGGTGGGGATCATTTTGGTCGTTGCTATGCTGATCACGCCTGCTGCCACTG
CTTTCTTATGGACGGATCGGCTTGAAACCATGCTCGTGATGGCAGCAAGCGTCGGGGTCATTTCGTCTATCACCGGGTTG
TATTTCAGCTTCACCTTTAACTGGGCATCCGGTCCGGCAATTGTGCTCGTAGCGGCGGTATTGTTCGCCATCTCGTTCGT
CTTTTCACCAAAACAGGCATTCTTTAGTTTCAGTAAGCGTCAGCGGACCAAAACAGCCGCGACGACTCAAACCGCGGAGG
AAGTTATTCGATGA

Protein sequence : 
MSSLAEFFTALGKYDFLQSALITAIMVGIMSGLIGSFIILRGMSLMGDAISHAVLPGVAVAYMLGVNVMIGASVFGIIAA
LLIGFVAANSKIKTDTSIGVVFSAFYALGFILISMAESATNLHHILFGNILAVSDSDIMTTAVVLGIVILFVVLFYKELL
ITSFDNTFAKTYGLNTTAIHYALMLVLTLVTVSALQTVGIILVVAMLITPAATAFLWTDRLETMLVMAASVGVISSITGL
YFSFTFNWASGPAIVLVAAVLFAISFVFSPKQAFFSFSKRQRTKTAATTQTAEEVIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 8e-57 60
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 6e-57 60
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-40 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-40 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-40 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-40 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-40 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LOCK908_2488 YP_008206965.1 Manganese ABC transporter, inner membrane permease protein SitD BAC0352 Protein 1e-40 43
LOCK908_2488 YP_008206965.1 Manganese ABC transporter, inner membrane permease protein SitD BAC0442 Protein 1e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LOCK908_2488 YP_008206965.1 Manganese ABC transporter, inner membrane permease protein SitD VFG0528 Protein 1e-40 43