Gene Information

Name : LOCK908_2487 (LOCK908_2487)
Accession : YP_008206964.1
Strain : Lactobacillus rhamnosus LOCK908
Genome accession: NC_021725
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter, periplasmic-binding protein SitA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2480109 - 2481050 bp
Length : 942 bp
Strand : -
Note : -

DNA sequence :
ATGAAGAAGATTTTAATTACGGTGGGCGCCTTAATTGTGATGATTGGCGGTGTCTTTTGGTTCATCAACAGTCGGAGCAC
GGCTCAAAAAGATTCAGCAAGCACGAATCAAACGTTGCGGGTGGTCACAACCAATTCGATTTTGGAGGATATGGTTCAAA
ATGTCGGCGGCGAGCGGATCAAGCTGTACAGTATTGTTAAACGCGGCACGGATCCGCATGAGTATGAACCGCGCCCAACC
GATGTGGCGGCAACCAGTGAAGCCGATGTTGTGTTTCATAATGGTTTGAACCTTGAAACCGGTGGGAATGGCTGGTTTAA
GAAGTTGGTTAAGACGTCGCACAAGGAATTTGATAAGGATGTTTTCGCTGCAAGTAAAGGCGTGACCGCCCAACACTTAA
CAACGAACACCAAGGAACAGGATCCGCATGCTTGGCTAGACTTAGCTAACGGCATCCAGTATGTTAAGACGATTACCAAG
GTGCTTAAACAAAAAGATGCCAAAAACGCTGCTTATTACCAGAAGAATAGCGATCGTTACGTTGCCAAGTTGCAAAAACT
ACATGAAACCGCGCTGTCACGCTTCCTCGATATTCCGGAAAAGCAACGCGTGTTAGTGACGTCAGAAGGGGCCTTTAAGT
ACTTTTCCAAGGCTTATCATGTGACCCCGGCATACATTTGGGAAATCAACACCGAATCTCAAGGAACACCAGAACAAATG
CAGACGGTTCTAGCTAAGATTCGTGCATCCGAAGTGAAACATCTATTCGTGGAAACCTCGGTCTCACCGAAGTCCATGAA
TAAAGTGGCCAAAGAGACCGGGTTGTCGATTTACTCGAAGATTTTCACGGACTCGCTGGCGGCTAAGGGTACTCAAGGCG
ATACGTATTATACGATGATGAAATGGAACCTTGATAAGATTCACGATGGATTGGCAGGTTAG

Protein sequence :
MKKILITVGALIVMIGGVFWFINSRSTAQKDSASTNQTLRVVTTNSILEDMVQNVGGERIKLYSIVKRGTDPHEYEPRPT
DVAATSEADVVFHNGLNLETGGNGWFKKLVKTSHKEFDKDVFAASKGVTAQHLTTNTKEQDPHAWLDLANGIQYVKTITK
VLKQKDAKNAAYYQKNSDRYVAKLQKLHETALSRFLDIPEKQRVLVTSEGAFKYFSKAYHVTPAYIWEINTESQGTPEQM
QTVLAKIRASEVKHLFVETSVSPKSMNKVAKETGLSIYSKIFTDSLAAKGTQGDTYYTMMKWNLDKIHDGLAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0577 NP_814342.1 adhesion lipoprotein Virulence Not named Protein 1e-78 52
ef0095 AAM75298.1 EF0095 Not tested Not named Protein 9e-79 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LOCK908_2487 YP_008206964.1 Manganese ABC transporter, periplasmic-binding protein SitA VFG2165 Protein 5e-82 61
LOCK908_2487 YP_008206964.1 Manganese ABC transporter, periplasmic-binding protein SitA VFG2157 Protein 9e-73 52
LOCK908_2487 YP_008206964.1 Manganese ABC transporter, periplasmic-binding protein SitA VFG1359 Protein 2e-75 50