Gene Information

Name : LOCK900_1401 (LOCK900_1401)
Accession : YP_008203026.1
Strain : Lactobacillus rhamnosus LOCK900
Genome accession: NC_021723
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein YvcR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1355099 - 1355869 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAACATTATTAAAGTTGAAAAATGTCGAAAAGACTTATACCAGTCGCGGTGCCCAACCGGTACAGGCGCTCGTGAA
CATCAGTTTTTCCGTTGAATCAGGAGAATTTGTCGCGATTATGGGGGAATCCGGTTCAGGCAAAAGTACCTTACTGAACT
TAATCGCCACGCTCGATGATCCTACCGGCGGCGAAATCAGCCTTAACGGACAGGACCTGCGCAAAGTCAAAGAAGGCGCA
CGGGCTAAATTTCGGCGGGAACATCTCGGGTTTATTTTTCAGGATTTTGACTTGCTTGACACCTTTAACGTACAGGACAA
CATTTTCCTGCCATTAGTCTTAGCCAAGAAGCCGCTTGAAATCATGAAAAATCGGCTCACCCAATTGGCGCCGCGTCTTG
GTATCACCGATTTACTGAAAAAATACCCATATGAACTTTCCGGTGGCCAACAACAACGTGTGGCCGCTGCTCGGGCGATG
ATCACCGAGCCGGAAATCCTACTGGCAGACGAACCCACCGGCGCACTTGATTCTAGAACTTCCAGTGAGCTGTTGGACCT
GCTAACCGATGTCAATGCCGAAAGTAAGCAGACAATCCTCATGGTGACGCACAGTGCGGTTGCGGCCAGTCATAGCCAGC
GCGTTTTGTTTATTCGCGATGGTCAGATTTTCCATCAGCTGTATCGCGGTGAATTACAGCAACCCGAATTTTTGACCCGA
ATCAGCGAAACCATGACCGCAATGCTGACGAAGGAAGGCGAGGCGCAATGA

Protein sequence : 
MSTLLKLKNVEKTYTSRGAQPVQALVNISFSVESGEFVAIMGESGSGKSTLLNLIATLDDPTGGEISLNGQDLRKVKEGA
RAKFRREHLGFIFQDFDLLDTFNVQDNIFLPLVLAKKPLEIMKNRLTQLAPRLGITDLLKKYPYELSGGQQQRVAAARAM
ITEPEILLADEPTGALDSRTSSELLDLLTDVNAESKQTILMVTHSAVAASHSQRVLFIRDGQIFHQLYRGELQQPEFLTR
ISETMTAMLTKEGEAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LOCK900_1401 YP_008203026.1 ABC transporter ATP-binding protein YvcR CP001581.1.gene798.p Protein 1e-36 48
LOCK900_1401 YP_008203026.1 ABC transporter ATP-binding protein YvcR NC_012469.1.7686878. Protein 3e-34 47
LOCK900_1401 YP_008203026.1 ABC transporter ATP-binding protein YvcR CP001581.1.gene598.p Protein 1e-33 43
LOCK900_1401 YP_008203026.1 ABC transporter ATP-binding protein YvcR NC_008702.1.4606598. Protein 2e-28 42