Gene Information

Name : LOCK919_2648 (LOCK919_2648)
Accession : YP_008201143.1
Strain : Lactobacillus casei LOCK919
Genome accession: NC_021721
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter, inner membrane permease protein SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2597561 - 2598457 bp
Length : 897 bp
Strand : -
Note : -

DNA sequence : 
ATGACATCAATAATGGAATTCTTTACCGCTTTGGGAAAATATGATTTCCTGCAAAGCGCGTTGATCACCGCCATCATGGT
TGGTATCATGTCAGGCTTGATCGGAAGTTTCATCATTTTACGCGGCATGTCGCTGATGGGGGATGCGATTTCCCATGCGG
TCCTGCCCGGGGTAGCCGTTGCTTATATGCTCGGTATTAACGTCATGATCGGGGCATCGGTTTTCGGAATTATTGCGGCT
TTGCTGATCGGGTTTGTGGCAGCCAACAGTAAAATCAAAACCGACACATCTATCGGGGTCGTGTTCAGTGCATTCTATGC
CTTGGGTTTTATTCTGATTTCAATGGCTGAAAGTGCGACTAACTTGCACCATATTCTGTTCGGTAACATTTTAGCCGTCA
GCGACAGCGACATTGTCACCACCGCTGTCGTGTTGGGAATTGTGATCCTGTTCGTGGTTCTGTTCTATAAGGAACTGCTG
ATCACCTCGTTTGATAATACGTTTGCGAAAACGTATGGCTTGAATACCACCATGATTCACTATGCTTTGATGCTGGTGTT
GACGCTTGTCACCGTTTCAGCCTTGCAGACAGTTGGGATCATTCTAGTTGTGGCGATGCTGATTACGCCAGCAGCAACTG
CCTTCTTGTGGACGGATCGGTTAGAAACGATGTTGATCACGTCCGCTAGCGTAGGCGTTTTCTCGGCCATCACCGGACTT
TACTTCAGTTTCACCTTTAACTGGGCATCCGGGCCGGCCATTGTGCTCGTAGCTGCGGTCCTGTTCGCCATTTCCTTCGT
CTTCTCACCGAAGCAGGCGTTCTTCAGTTTTAGTAAAAAACAGCGAGAAAAGAAAACCGCTGCTGCTACCCACACTGCCG
AGGAGGCTGTTCGATGA

Protein sequence : 
MTSIMEFFTALGKYDFLQSALITAIMVGIMSGLIGSFIILRGMSLMGDAISHAVLPGVAVAYMLGINVMIGASVFGIIAA
LLIGFVAANSKIKTDTSIGVVFSAFYALGFILISMAESATNLHHILFGNILAVSDSDIVTTAVVLGIVILFVVLFYKELL
ITSFDNTFAKTYGLNTTMIHYALMLVLTLVTVSALQTVGIILVVAMLITPAATAFLWTDRLETMLITSASVGVFSAITGL
YFSFTFNWASGPAIVLVAAVLFAISFVFSPKQAFFSFSKKQREKKTAAATHTAEEAVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-57 59
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-57 59
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-40 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-40 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-40 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-40 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-40 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LOCK919_2648 YP_008201143.1 Manganese ABC transporter, inner membrane permease protein SitD BAC0352 Protein 2e-40 43
LOCK919_2648 YP_008201143.1 Manganese ABC transporter, inner membrane permease protein SitD BAC0442 Protein 1e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LOCK919_2648 YP_008201143.1 Manganese ABC transporter, inner membrane permease protein SitD VFG0528 Protein 2e-40 43