Gene Information

Name : PSYCG_03400 (PSYCG_03400)
Accession : YP_008162557.1
Strain : Psychrobacter sp. G
Genome accession: NC_021661
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein vipB/tviC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 728082 - 729116 bp
Length : 1035 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGGTTATGACGTTAACTGCATATGAAAAAGTTCAAAAAGTATTAATTAACGAACCAAAAACTTGGTTGATTACTGGGGT
AGCGGGATTCATAGGCTCTAATTTACTAGAAGAGTTATTGTTACTAAATCAAAAAGTAGTCGGTCTAGATAACTTTGCTA
CTGGTTTTCAGCATAACTTAGATGAAGTACAGGGTTTAGTAAATGAAGATCAGTGGCAGAACTTTACTTTTATAGAAGGC
GATATTCGTAATCTAGATGACTGTCAGTCAGCATGTATAGGCGTAGACTACGTACTGCATCAAGCAGCACTAGGTTCGGT
GCCACGTTCTATTGCTAATCCCATTAATACCAATGATACCAATATCTCAGGCTACTTAAATATGCTCGTAGCAGCTCGTG
ATGCAAAGGTTGCTAGCTTTACCTATGCGGCTAGTAGCTCAACGTATGGCGATCATCCAGCATTACCAAAAGTCGAAGAT
GCTATTGGCAATCCGTTATCACCCTATGCGGTGACTAAATATGTCAATGAGCTGTATGCCGATGTGTTCGCACGTACTTA
TAACTTTAAAACGATCGGTCTGCGTTATTTCAATATTTTTGGTAAACGACAAACACCTGATGGTGCCTATGCAGCGGTAA
TACCAAAATGGACGGCTGCTATGATCGCAGGTGATGAAGTATTTATTAATGGCGATGGTGATACCAGTCGCGACTTTAAT
TTTATTGAAAATGCGGTACAAGCTAATATTTTAGCTGCGACAGCCAATAACGAAGCCAAGAACCAAGTATATAATGTAGC
AGTTGGCGGTCGTACTACTCTTAATACGCTATTTTCAGCACTTAAAGAGCATTTAAGTACTAATGAGGTTGGCTACACTC
AAGACCCAGTCTATCGAGATTTTAGAGCAGGGGATGTGCGTCATAGTCAGGCTGATATTAGCAAAATACAAAATGCGTTA
GGCTATGCGCCACAGTTTGATATTATTCAAGGTATCGAGAAAGCGATGCCTTGGTATGTAAAGTCCTTAACTTAA

Protein sequence : 
MVMTLTAYEKVQKVLINEPKTWLITGVAGFIGSNLLEELLLLNQKVVGLDNFATGFQHNLDEVQGLVNEDQWQNFTFIEG
DIRNLDDCQSACIGVDYVLHQAALGSVPRSIANPINTNDTNISGYLNMLVAARDAKVASFTYAASSSTYGDHPALPKVED
AIGNPLSPYAVTKYVNELYADVFARTYNFKTIGLRYFNIFGKRQTPDGAYAAVIPKWTAAMIAGDEVFINGDGDTSRDFN
FIENAVQANILAATANNEAKNQVYNVAVGGRTTLNTLFSALKEHLSTNEVGYTQDPVYRDFRAGDVRHSQADISKIQNAL
GYAPQFDIIQGIEKAMPWYVKSLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 7e-101 65
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 7e-101 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSYCG_03400 YP_008162557.1 Vi polysaccharide biosynthesis protein vipB/tviC VFG0430 Protein 3e-101 65