Gene Information

Name : PSYCG_03395 (PSYCG_03395)
Accession : YP_008162556.1
Strain : Psychrobacter sp. G
Genome accession: NC_021661
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein vipA/tviB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 726781 - 728058 bp
Length : 1278 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGTTAGACATCAAAGATATAAGAATTGCAGTCATTGGTCTAGGTTATGTAGGTTTGCCATTGGCGGTTGAGTTTGGTAA
GTCTTTGCCAGTAGTAGGTTTCGATATAAATGCCAGTCGTATAGCTGCACTTTGCACAGGTACAGATCATACGTTAGAAG
TGAGTAATGAAGAATTAGCACAGGCCTCGCACTTGAGTTACAGTTGCGATATCAAAGCACTCAAAGATTGTAACTTTTTT
ATAGTGACCGTACCGACGCCTATCGATAAGTATAAACAACCCGATTTGACGCCATTAATAAAAGCCTCTGAGGCTATCGG
CAGCCTGCTGAAAAAAGATGATATTGTGGTCTATGAGTCTACCGTCTACCCTGGTGCGACTGAAGAAGTCTGTATCCCAG
TACTCGAAAAAGTTTCTGGATTAGCCTTCAATAAAGATTTTTATGCGGGTTACAGTCCTGAGCGTATTAATCCGGGTGAT
AAAGAGCACCGTGTTACTAATATCCTAAAAGTAACAGCAGGCTCGACACCTGAGGTAGCAGATTTCGTTGATGACGTATA
TAACTTAATTATTACCGCGGGTACGCATAAAGCTGCCAGTATCAAGGTGGCAGAAGCGGCAAAGGTTATCGAAAACACCC
AAAGAGATGTAAATATCGCTTTAATCAATGAGCTCGCCGTTATCTTTAATAAGATGGGGATAGATACTCAAGCAGTATTA
GAAGCAGCAGGAACCAAATGGAACTTTCTACCGTTCCGACCGGGTTTAGTAGGCGGTCACTGTATTGGCGTTGATCCGTA
TTATTTGACGCACAAAGCGCAAGCTATTGGCTATAATCCTGAGATCATTTTGGCTGGCCGTCGCCTGAACGATAGTATGG
GCGAGTATGTTGTCACGCAGCTCGTTAAAACCATGATTAAAAAGCGCATTCAAGTTGAAGGAGCCAAAGTTTTAATCTTA
GGATTAAGCTTCAAAGAAAACTGCCCCGACGTGCGTAATACCAAGGTTATCGATATTGTCCATGAGTTAGAAGAATATAA
TATCGAAGTCGATGTTTATGACCCTTGGGTAGATAAAGCAGAAGCTGAGCGTGAATATAATGTGACGCCTATTAGCAAGC
CCGCTATAAATAACTATGATGGTATTATCTTAGCAGTCGCGCATAATGAATTCGTCGAGCTGGGTGTAGATCAGATTAGA
GCGTTTGGCAAGAATGAACACGTGCTTTACGATTTAAAGTATGTTTTCACTAAAGAAGACACTGATATCCGCTTATAA

Protein sequence : 
MLDIKDIRIAVIGLGYVGLPLAVEFGKSLPVVGFDINASRIAALCTGTDHTLEVSNEELAQASHLSYSCDIKALKDCNFF
IVTVPTPIDKYKQPDLTPLIKASEAIGSLLKKDDIVVYESTVYPGATEEVCIPVLEKVSGLAFNKDFYAGYSPERINPGD
KEHRVTNILKVTAGSTPEVADFVDDVYNLIITAGTHKAASIKVAEAAKVIENTQRDVNIALINELAVIFNKMGIDTQAVL
EAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYNPEIILAGRRLNDSMGEYVVTQLVKTMIKKRIQVEGAKVLIL
GLSFKENCPDVRNTKVIDIVHELEEYNIEVDVYDPWVDKAEAEREYNVTPISKPAINNYDGIILAVAHNEFVELGVDQIR
AFGKNEHVLYDLKYVFTKEDTDIRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-147 67
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-147 67
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 6e-111 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSYCG_03395 YP_008162556.1 Vi polysaccharide biosynthesis protein vipA/tviB VFG0431 Protein 3e-147 67