Gene Information

Name : M621_24575 (M621_24575)
Accession : YP_008161660.1
Strain : Serratia plymuthica S13
Genome accession: NC_021659
Putative virulence/resistance : Virulence
Product : fimbrial protein SteB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5223818 - 5226352 bp
Length : 2535 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGGTGTTTTTTCCTGCAGGGACGCGGTTTCGTATTCAGTTGTTAAGGGCCTGTATTTGCCTGGCGATAAGTTCTGCCGC
ACCGCTGGCTTTTGCCGACGACGGCATACAGTTTAATACCGACGTGCTGGATGTGAACGACCGGAAAAATATCGACCTGA
GCCAGTTCTCCCGTAGCGGCTACATGATGCCGGGGACCTACAGCCTGACGGTACACATCAATAAAAATGAGCTGCCGGAG
CAGAGCGTTCCTTTTTATCCGCCTGACGATGATCCGAAAGGCAGCCAAGCCTGTCTTTCACCGGTATTGGTGGGCCAACT
GGGGCTAAAGGCGGATGCGCTGAAAGGGTTACGCTGGTGGCACCAGGACGAATGTCTGGACATTACCAGCTTGAAGGGTA
TGGAAGCCCGGGGCGATCTGGCTACCGCGGCGTTGTACCTGAGCATTCCCCAGGCTTATCTGGAGTACGCTTCGGCGGAC
TGGGATCCGCCTTCGCGCTGGGATGAAGGTATTCCCGGGCTGTTGTTTGATTACAACCTTAATGGCCAGGCTCAGCACCA
GCAGCGGGACGGCTCAAAAAGCTACACCCTGAGCGGCAACGGCACCACCGGCGCCAATCTGGGAGCTTGGCGGCTGCGCG
CCGACTGGCAGGGGCAGTTTAACCGCCAGACCGGCAGCGGGCAGGGCACCGACCAGCAGTTGGACTGGAGCCGCTATTAC
GCCTACCGGGCACTGCCGGCACTGCGTTCGCGGCTGACGCTGGGGGAGGCTTACCTCAACTCCGGTATGTTCGACAGCTT
CCGCTTCAGCGGGGCCAGCCTGGTGTCGGACGACAACATGCTGCCACCGAATCTGCGTGGTTATGCGCCGGAGGTTGTGG
GGGTGGCGAAGACCAACGCCAAGGTGACCATCAGCCAGCAGGGCCGGGTAATTTACGAAACCCAGGTGGCGGCGGGGCCG
TTCCGCATTCAGGACATCAACGATGCGGTATCCGGCGAACTGGAGGTGCGGGTGGAGGAGCAGGACGGCAGTGTGCAGGC
ATTCAAGATGAACACCGCCAGCATTCCGTACCTGACCCGGCCCGGTTCGGTGCGCTACAAGTTTGCCGCAGGGCGTCCGT
CGGACTGGCAGCATCATGCTGACGGCCCGCTGTTCGGCACCGGGGAATTTTCCTGGGGGGTGAGCAACGGATGGTCGCTG
TACGGCGGTGTGCTGGGCGGTGGCGATTATAACGCGGCGTCGTTGGGGATCGGCCGCGACCTGATGGCGCTGGGAGCCTT
GTCGTTCGACGCCACCCAGTCGCGGGCGCGTTTGCCGCAGCAGGACGGCACGCTGAGCGGCGGCTCATACCGCCTGAGCT
ATTCGAAGAGCTTTGACGAGTTGGACAGCCAGGTGACCTTTGCCGGTTACCGCTTCTCGGAACAAGACTTCATGAGCATG
AGCGAGTATCTGGATGCTCGCCATGAGGGCCGCCGGATAGGCAATAACAAGGAGATGTACACCATCACCTTTAACAAGCA
GTTCCGGGATGCGGGGATCAGCTTGTACCTGAACTACGACCACCAGACCTACTGGGATCGGCCGGTCAATGATCGTTATA
ACCTGACGATGTCGCGCTACTTCGACATCGGGCGATTCAAGAACCTGAGCCTGTCGCTGTCCGGTTACCGTAACAAATAC
AACGGCAGCAACGACGACGGTATGTATCTGTCGTTGACGATGCCGTGGGGGAGCAGTGCCAACGTCAGCTACAACACCGC
GGTGAACCGTAACGACACCACCCATCGGGTGGGGTATTACGACCGGATTGACGAGCACAACAACTACCAGCTGAGCGCGG
GCAGTTCGCGCGGCGGTGCCAACCTGAGCGGTTATTACAACCGCGAGGGTGATGTTGCCCAGATGAGCGCCAACGCCAGT
TATCAGGAAGGCAGCTACAGCGCGCTGGGCTTCTCTGCTCAGGGCGGCGCGACGTTGACGACTCAAGGCGGCGCACTGCA
CCGCATCGGCATGCCGGGTGCCACCCGCTTGCTGCTGGATACCGGCGGTGTGGCTGGGGTGCCGGTACGCGGTTACGGCA
GCACCAGCAACACCAACAGGTTCGGCAAGGCGGTGGTGACGGACGTGAGCAACTACTACCGCAACCAGGCCAGCATTGAT
CTGAACAAGCTGGGCGACAACGCCGAGGCTACCAAATCGGTGGTGCAGGCCACCCTGACCGAGGGCGCGATCGGTTACCG
CAAATTTGACGTGATCGCCGGGGAGAAGGCGATGGCGGTGATCACCCTGGCGGATGGCAGCACCCCACCGTTCGGTGCAA
CGGTGATGAACGCTAACAAGCAGGATACAGGGATTGTGAACGACGGCGGCAGCGTTTACCTGAGCGGCATTCAGGTCGGT
GACCGCATGACGGTGCACTGGAACGGCGCGGCGCAGTGCGCCATCAGCCTGCCGAAAGTGCTGCCGGAAAGCACGCTGAG
CAACCTGCTGTTGCCGTGCCAGGCATTGCCGGCGGCAGAGGCAGACGCGCAGTAA

Protein sequence :
MVFFPAGTRFRIQLLRACICLAISSAAPLAFADDGIQFNTDVLDVNDRKNIDLSQFSRSGYMMPGTYSLTVHINKNELPE
QSVPFYPPDDDPKGSQACLSPVLVGQLGLKADALKGLRWWHQDECLDITSLKGMEARGDLATAALYLSIPQAYLEYASAD
WDPPSRWDEGIPGLLFDYNLNGQAQHQQRDGSKSYTLSGNGTTGANLGAWRLRADWQGQFNRQTGSGQGTDQQLDWSRYY
AYRALPALRSRLTLGEAYLNSGMFDSFRFSGASLVSDDNMLPPNLRGYAPEVVGVAKTNAKVTISQQGRVIYETQVAAGP
FRIQDINDAVSGELEVRVEEQDGSVQAFKMNTASIPYLTRPGSVRYKFAAGRPSDWQHHADGPLFGTGEFSWGVSNGWSL
YGGVLGGGDYNAASLGIGRDLMALGALSFDATQSRARLPQQDGTLSGGSYRLSYSKSFDELDSQVTFAGYRFSEQDFMSM
SEYLDARHEGRRIGNNKEMYTITFNKQFRDAGISLYLNYDHQTYWDRPVNDRYNLTMSRYFDIGRFKNLSLSLSGYRNKY
NGSNDDGMYLSLTMPWGSSANVSYNTAVNRNDTTHRVGYYDRIDEHNNYQLSAGSSRGGANLSGYYNREGDVAQMSANAS
YQEGSYSALGFSAQGGATLTTQGGALHRIGMPGATRLLLDTGGVAGVPVRGYGSTSNTNRFGKAVVTDVSNYYRNQASID
LNKLGDNAEATKSVVQATLTEGAIGYRKFDVIAGEKAMAVITLADGSTPPFGATVMNANKQDTGIVNDGGSVYLSGIQVG
DRMTVHWNGAAQCAISLPKVLPESTLSNLLLPCQALPAAEADAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 0.0 50
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 2e-163 47
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 7e-162 47
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 5e-162 47
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 3e-163 47
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 3e-163 47
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 3e-163 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M621_24575 YP_008161660.1 fimbrial protein SteB VFG1548 Protein 1e-163 47
M621_24575 YP_008161660.1 fimbrial protein SteB VFG0884 Protein 1e-163 47
M621_24575 YP_008161660.1 fimbrial protein SteB VFG0895 Protein 1e-163 47