Gene Information

Name : M621_24175 (M621_24175)
Accession : YP_008161581.1
Strain : Serratia plymuthica S13
Genome accession: NC_021659
Putative virulence/resistance : Virulence
Product : RbsK
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5129866 - 5131077 bp
Length : 1212 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGTTTCTCGAAGAACGACGCAATAACATTCTGGATTATCTGGATAAATATGAACGCGTTAGCGTGGCGTACCTGGCCAC
GTCTTTTGCGGTGACCAAAGAAACCATCCGCAGCGATTTAAACGTGCTGGCGCAACTGGGGTTAGTGCAGCGCTGCCACG
GCGGCGCGATAGTCATCCGGCGTAGCCTGCAGGCCAAATTAATTACCGAAACCGACGGCACGTTCGAAGTGCTGTTAAGG
CGCCTGGAAAGCCAGAAAAGAAAGGTGCAGGAGCCGGAGAGAGGAAAAAACATGCGAGGCAAGGTCTGTATTCTGGGGTC
ATTCAATGTCGATATCGTCGCCAGAGTGGCGCGCTTTCCCAAAGGCGGCGAATCGCTGCTGGCGCTAGGCAGTACGCTCG
GCCCCGGCGGCAAGGGGGCCAATCAGGCGATGGCCGCCAGCCGGGCCGGCGCTCAGGTGCATTTCGTGTCCAAAGTGGGC
AAAGATCAGTTCAGCCAGTTCGCTTTCGACCATCTCTCTGCGTCGGAAATCCACTCGTTCACTTTATACCAATCGGAAAC
CGAGCCGACCGGCAACGCCATCATTTATGTTTCGCAGCAGGACGGCGAGAACATGATCGCCATTTATTCCGGCGCCAATA
AAACCATCACCGACGAAGAAGTGGCTGCAATCGCCCCGGAGCTGGCCGGCGCGGAGGTTCTGCTGGTGCAGCTGGAGAAT
AACTTTAACGCCACGCTGAACGCGATGAAGCTGGCCAATGCGTTGGGGATACGGGTGATCCTCAATCCTGCGCCTTACTC
CGCCGACGCGCTGCAATGCCTGGAATATGTCGATGTGATCACCCCGAATGAAACCGAGGCCTCGCTGCTGTCCGGCGTGG
AGGTCACGGATTTGAACAGCGCCAAAGAGGCGGCGCAGCGTATCGCCGCGCTGGGCGCCCGACGGGTCATCATCACCATG
GGAGCGCGCGGAGCGATGATCCTCGAAGGTTCTCAGTTCCAGCATATTCCCGCATTCCCGGCGTTGAGCGTCGATACCAC
CGGCGCGGGAGATGCGTTCAACGGCGCCTTCGCCGCGGCTATCGCCACCGGGCAAACGATTGCCCAGGCGGCAACCTATG
CCGCCGCCTTCGCGTCACTGGCGGTGGAAAGAGAAGGGGCGTCAAACATGCCGCAACATCAACAGGTGGTGGCTCGTCTG
AGCCAGCGCTGA

Protein sequence :
MFLEERRNNILDYLDKYERVSVAYLATSFAVTKETIRSDLNVLAQLGLVQRCHGGAIVIRRSLQAKLITETDGTFEVLLR
RLESQKRKVQEPERGKNMRGKVCILGSFNVDIVARVARFPKGGESLLALGSTLGPGGKGANQAMAASRAGAQVHFVSKVG
KDQFSQFAFDHLSASEIHSFTLYQSETEPTGNAIIYVSQQDGENMIAIYSGANKTITDEEVAAIAPELAGAEVLLVQLEN
NFNATLNAMKLANALGIRVILNPAPYSADALQCLEYVDVITPNETEASLLSGVEVTDLNSAKEAAQRIAALGARRVIITM
GARGAMILEGSQFQHIPAFPALSVDTTGAGDAFNGAFAAAIATGQTIAQAATYAAAFASLAVEREGASNMPQHQQVVARL
SQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rbsk YP_216390.1 DeoR family transcriptional regulator Not tested SPI-2 Protein 1e-62 49
orf408 NP_460347.1 regulatory protein Not tested SPI-2 Protein 3e-63 49
ORF 408 CAB37417.1 - Not tested SPI-2 Protein 3e-63 49
APECO1_1076 YP_853096.1 carbohydrate kinase Not tested PAI IV APEC-O1 Protein 4e-65 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M621_24175 YP_008161581.1 RbsK VFG0483 Protein 1e-63 49